Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3675
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0095 - 991086-991487,992745-992903                               29   1.9  
01_07_0206 + 41990251-41992032,41992131-41992361                       28   2.5  
11_03_0049 - 9318578-9319312                                           28   3.3  
08_02_0191 + 14041201-14043894,14044354-14044632                       28   3.3  
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949     27   5.7  
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196           27   7.6  
06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514     27   7.6  

>04_01_0095 - 991086-991487,992745-992903
          Length = 186

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -1

Query: 356 MCGRNVIDASRVTP---RYLTFLTQGIGWPKRVIGGV 255
           +CG  V+ A+  TP      T   Q +GWP   +GGV
Sbjct: 10  LCGMTVVAATSSTPWPSAVATGFGQSLGWPDPRVGGV 46


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 82  YSSRNKSLIAKKLQSAALALGQWFRKWR 165
           Y + +K+ ++K+ + + L LGQW   WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299


>11_03_0049 - 9318578-9319312
          Length = 244

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 22  DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWF 153
           D+P +PP ++A    D   Y   R+K ++  +    +   G W+
Sbjct: 148 DLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWY 191


>08_02_0191 + 14041201-14043894,14044354-14044632
          Length = 990

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 173 STRRKAQQCYFKGETHRLF-PPALGGEISLPQSPSSANLYPGSGRLSTWESPWMH 334
           ST      C+  G   R+  PP     +++P    S  +Y GS R S W  PW+H
Sbjct: 364 STLEVPYHCFVLGSVCRVSSPPVPLWRVAVPLY--SDQVYSGS-RPSPWPDPWLH 415


>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
          Length = 550

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/30 (33%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 135 SPRTVVPKMAHRHQPGEKHSSV-ISKGKLT 221
           +P ++V ++ +RH  GEK++ + + KG++T
Sbjct: 483 NPISIVTELRNRHAKGEKNAGINVRKGQIT 512


>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
          Length = 676

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 381 TGPPLEFFYVWAECHRCIQGDSQVLNLPDPGYRLAEEGDWGSDISPPNAGGNKR 220
           +GPP   F V+    R     SQ  N+ +      +E D+G D+S    G  K+
Sbjct: 155 SGPPAFNFGVFGGGRRAGASSSQGTNVSEDDGNEEDEEDFGPDVSIQEKGDAKK 208


>06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514
          Length = 323

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 239 LGGEISLPQSPSSANLYPGSGRLSTWESPWMHL*HSAHT*KNSRGGPVPNSP 394
           L G  S+ +SPS+ N       +S W S      H + T     G P P +P
Sbjct: 264 LSGFRSVRKSPSTPNFADAENGISMWSSSAWTFNHESFTRPLLDGLPKPTAP 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,088,466
Number of Sequences: 37544
Number of extensions: 298493
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)