Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3675
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    39   0.001
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    39   0.001
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    30   0.74 
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    29   1.3  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    29   1.3  
AF099925-12|AAC69509.1|  257|Caenorhabditis elegans Hypothetical...    27   3.9  
Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical p...    26   9.1  
U88180-6|AAB42300.1|  373|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor tyro...    26   9.1  
AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor tyro...    26   9.1  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +1

Query: 1   LFSLFINDIPRSPPTHLAL--FADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDI 174
           LF +++NDI    P  +A   FADDT +Y +S  K+     LQSA  A+  W +  ++ +
Sbjct: 87  LFGIYVNDISSILPEKVACKQFADDTKLY-ASTPKTESENNLQSALDAVVDWTKGSKLTL 145

Query: 175 NPAKSTAV 198
           N +K+  V
Sbjct: 146 NQSKTVHV 153


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 26/119 (21%), Positives = 49/119 (41%)
 Frame = +1

Query: 1   LFSLFINDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINP 180
           LF+ ++ D+P    T L  +ADD ++    +     A+K+Q     + ++ ++  + I+ 
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602

Query: 181 AKSTAVLFQRGXXXXXXXXXXXXXXXXXXXXFGQPIPWVRKVKYLGVTLDASMTFRPHI 357
            KST  +F                          PIP +   K LG+TL+     + H+
Sbjct: 603 EKSTVTVFS--------CDPKEHKTKPDIYWMDDPIPVINAPKLLGITLNTMTGTKDHV 653


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 313 LGVTLDASMTFRPHIKKL 366
           LG+  D+ +TF+PHIKK+
Sbjct: 198 LGILTDSKLTFKPHIKKI 215


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 19  NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 183
           ND+P+    +L L   D+  YY    KS++  + +     L + F K   DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 19  NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 183
           ND+P+    +L L   D+  YY    KS++  + +     L + F K   DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638


>AF099925-12|AAC69509.1|  257|Caenorhabditis elegans Hypothetical
           protein K01A2.10 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 218 HRLFPPALGGEISLPQSPSSANLYPGSGRLS 310
           HR+FPP   G +    S S A  YPG+ R+S
Sbjct: 215 HRIFPPVSSGLL----SASVAVTYPGNSRIS 241


>Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical
           protein R07B5.9 protein.
          Length = 657

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 150 VPKMAHRHQPGEKHSSVISKGKLTAYFLPH*EEKYHSPNHPLRPT 284
           +PK    HQ  E +  V  +  +T Y +P  +  + SP H   P+
Sbjct: 211 IPKSDEDHQSTEAYDRVEDEVPITDYNIPTPDSYHSSPPHSPTPS 255


>Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 393 GELGTG-PPL-EFFYVWAECHRCIQGDSQVLNLPDPGYRLAEEGD 265
           G  G G PP  +  Y   + HR ++G S ++   D  Y  +E+GD
Sbjct: 856 GSSGAGRPPTHQRGYPSQKLHRRVEGASPLMKRHDANYAYSEDGD 900


>Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical
            protein C01G6.8a protein.
          Length = 928

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 393  GELGTG-PPL-EFFYVWAECHRCIQGDSQVLNLPDPGYRLAEEGD 265
            G  G G PP  +  Y   + HR ++G S ++   D  Y  +E+GD
Sbjct: 882  GSSGAGRPPTHQRGYPSQKLHRRVEGASPLMKRHDANYAYSEDGD 926


>Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 393 GELGTG-PPL-EFFYVWAECHRCIQGDSQVLNLPDPGYRLAEEGD 265
           G  G G PP  +  Y   + HR ++G S ++   D  Y  +E+GD
Sbjct: 856 GSSGAGRPPTHQRGYPSQKLHRRVEGASPLMKRHDANYAYSEDGD 900


>Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical
            protein C01G6.8a protein.
          Length = 928

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 393  GELGTG-PPL-EFFYVWAECHRCIQGDSQVLNLPDPGYRLAEEGD 265
            G  G G PP  +  Y   + HR ++G S ++   D  Y  +E+GD
Sbjct: 882  GSSGAGRPPTHQRGYPSQKLHRRVEGASPLMKRHDANYAYSEDGD 926


>Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical
           protein C01G6.8c protein.
          Length = 769

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 393 GELGTG-PPL-EFFYVWAECHRCIQGDSQVLNLPDPGYRLAEEGD 265
           G  G G PP  +  Y   + HR ++G S ++   D  Y  +E+GD
Sbjct: 723 GSSGAGRPPTHQRGYPSQKLHRRVEGASPLMKRHDANYAYSEDGD 767


>U88180-6|AAB42300.1|  373|Caenorhabditis elegans Hypothetical
           protein T27A3.7 protein.
          Length = 373

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 99  VPNREEASERSPSPRTVVPKMAHRHQPGEKHS 194
           VP   +   RSPSP + VPK   R Q  +  S
Sbjct: 309 VPRSRDTVARSPSPDSDVPKAPSRTQRAKSKS 340


>AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 902

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 393 GELGTG-PPL-EFFYVWAECHRCIQGDSQVLNLPDPGYRLAEEGD 265
           G  G G PP  +  Y   + HR ++G S ++   D  Y  +E+GD
Sbjct: 856 GSSGAGRPPTHQRGYPSQKLHRRVEGASPLMKRHDANYAYSEDGD 900


>AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor tyrosine
            kinase protein.
          Length = 928

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 393  GELGTG-PPL-EFFYVWAECHRCIQGDSQVLNLPDPGYRLAEEGD 265
            G  G G PP  +  Y   + HR ++G S ++   D  Y  +E+GD
Sbjct: 882  GSSGAGRPPTHQRGYPSQKLHRRVEGASPLMKRHDANYAYSEDGD 926


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,231,269
Number of Sequences: 27780
Number of extensions: 217922
Number of successful extensions: 505
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)