Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3674
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    26   2.5  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    25   5.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   10.0 

>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 122 YFNFIINSDIPLIWFQLIK*GEITLIFKS 208
           YF  I+ +D  L+WF  +    ITL F+S
Sbjct: 73  YFTEILYNDSSLLWFLFVSLCFITLSFQS 101


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 126 KYNFQLKKYNELILS 82
           K NFQLKKY++++ S
Sbjct: 77  KINFQLKKYDDMLQS 91


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 156 RGISLLMIKLKYNFQLKKYNELILS 82
           RG+ LL++   Y+F  + Y+ L +S
Sbjct: 283 RGVELLVVPWDYDFTKETYDGLFIS 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 828,762
Number of Sequences: 5004
Number of extensions: 9409
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)