Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3673
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0440 - 33954726-33954809,33955141-33955475,33955929-339561...    28   6.9  
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561...    27   9.1  
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    27   9.1  

>03_06_0440 -
           33954726-33954809,33955141-33955475,33955929-33956106,
           33956205-33956285,33956629-33956740,33956831-33956931,
           33957001-33957174,33957313-33957486,33957683-33957765,
           33957852-33957912,33958069-33958251,33959630-33959848
          Length = 594

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 467 RSLLYNKYTRIFNVKDNWLPIFWL--PQE*VTAKLG 366
           RSL +   T +F VK++  PIFW   P+  ++  LG
Sbjct: 310 RSLPWRPPTNVFRVKEDVRPIFWANRPKSYISRTLG 345


>03_02_0099 -
           5614007-5614233,5614725-5614998,5615086-5616179,
           5616674-5616772,5617371-5617389
          Length = 570

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 473 DGRSLLYNKYTRIFNVKDNWLPI 405
           DGR LL N   R+  V DN LP+
Sbjct: 228 DGRYLLTNSNDRVIRVYDNLLPV 250


>02_05_0220 -
           26885502-26885561,26885940-26886739,26887055-26887421,
           26887942-26888055,26888132-26888228,26889115-26889235,
           26889306-26889390,26889494-26889643,26889871-26889987,
           26890123-26890221,26890439-26890495,26890581-26890664,
           26890759-26890828,26891015-26891169,26891557-26892095,
           26892327-26892393,26892436-26892984,26893574-26893768,
           26894485-26894569,26895822-26896441,26897154-26897486,
           26897552-26897616,26897868-26897955,26898250-26898331,
           26898720-26898796,26899152-26899256,26899496-26899630,
           26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 327 FQNLSGSVIKAETAHFNHAAEIDPYYIDVQ 238
           F N SG   KA  AH  H AE D Y +D++
Sbjct: 505 FSNGSGLPWKATNAHIRHIAE-DNYTLDIE 533


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,566
Number of Sequences: 37544
Number of extensions: 300349
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)