Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3673
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026204-5|AAB71249.1|  239|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z68751-4|CAA92974.1|  425|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>AF026204-5|AAB71249.1|  239|Caenorhabditis elegans Hypothetical
           protein C30E1.4 protein.
          Length = 239

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -2

Query: 155 TIHHVTQNGFIHLGSQS*QQSVLADPNIEYVQSFIEINSKSKAKAFPLVP 6
           TIH++  +  IHL   S  QSV +   +E V++F+  ++K  + A P  P
Sbjct: 97  TIHNIVLHQPIHLSVASYSQSVFS-LKVESVENFLIGSNKFNSSASPSAP 145


>Z68751-4|CAA92974.1|  425|Caenorhabditis elegans Hypothetical
           protein T05E11.4 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 267 EIDPYYIDVQF*YLFSPQSAMKQGR*FFNPSGVLLGCYNTSCHSERIHSS 118
           + DP+ I++   Y + P     +GR  F P+   +G + T  H   I  S
Sbjct: 255 DADPHGIEIYLTYKYGPTKEFAEGRGAFVPTIEWIGLFPTDFHRFTIDQS 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,712
Number of Sequences: 27780
Number of extensions: 285776
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)