Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3672
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   0.57 
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   3.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   4.0  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   4.0  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    24   7.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    24   7.0  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 261 GGQAHSPPGIKWLLKPIDIYN 199
           GG  H P  + WLL+P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 252 AHSPPGIKWLLKPIDIYNVNAPPTLR 175
           A  PP IK    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 2   KNQTRKIIICVITGGRT 52
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 313 LGTGPPLEFFILFYCLNGWTSSQPTWY 233
           L TG  L   ILF+CL     + P W+
Sbjct: 726 LDTGTQLSVIILFFCLQLPMVNFPDWW 752


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 91  YFCREAVIRYGLKGEAVVVTIIETLERI 174
           +FCR  ++ YGL  E+ +V  +   E I
Sbjct: 119 FFCRLKLLDYGLLNESEMVENVSLTEAI 146


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +1

Query: 163 LERISQG-GWRIYVVDVY 213
           LER ++G GWR+YV+  Y
Sbjct: 313 LERETRGYGWRLYVLQEY 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,489,735
Number of Sequences: 5004
Number of extensions: 27874
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)