Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3666
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 41 2e-04
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 36 0.008
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 33 0.033
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 31 0.13
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 31 0.13
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.31
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 29 0.54
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 29 0.72
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 0.95
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.95
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.95
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.95
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 2.9
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 27 2.9
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.8
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.8
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 3.8
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.0
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 26 5.0
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 26 5.0
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.0
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 26 6.7
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.8
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 40.7 bits (91), Expect = 2e-04
Identities = 31/132 (23%), Positives = 58/132 (43%)
Frame = +3
Query: 81 TPDSLSDNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDST 260
T S S + +S T PS S+ + +S S + S + S S S+ S S+
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 261 DDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSG 440
+++ S V T +S + + +++S S+ + SRP + + ++T S +
Sbjct: 195 SSSSSSSSSSSSSVPIT-SSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTV 253
Query: 441 STTPVRSGQQTA 476
+ TP S T+
Sbjct: 254 TVTPSSSSSSTS 265
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 35.5 bits (78), Expect = 0.008
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 8/152 (5%)
Frame = +3
Query: 81 TPDSLSDNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDST 260
T SLS AAS T S ++ T T+ S + + A + S ++ SL+ST
Sbjct: 177 TSSSLSST-AASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNST 235
Query: 261 DDATTPSRIPMRKVTN----TKTSIARAAANASKLGVSTPNGSRPRTP--TGYLTPASGR 422
AT S V++ T ++ AA +AS S + P T TP S
Sbjct: 236 TSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSA 295
Query: 423 QRTP--SGSTTPVRSGQQTAVSRLLRKPVGRV 512
T S S+TP+ S T + P+ V
Sbjct: 296 NSTTATSASSTPLTSVNSTTTTSASSTPLSSV 327
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 33.5 bits (73), Expect = 0.033
Identities = 31/131 (23%), Positives = 49/131 (37%)
Frame = +3
Query: 228 RHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLT 407
+H +++ +D D + PS K S+ R N S+ S P+ PR PT
Sbjct: 543 KHENSVEIDKKADDSLPSN---NKTEGYTPSVVREEKNYSEPNAS-PSVIPPRVPT---- 594
Query: 408 PASGRQRTPSGSTTPVRSGQQTAVSRLLRKPVGRVGVRHAGDARRPPRPRHAQNHRETRT 587
P GR +P + P VS K RH P N ++
Sbjct: 595 PVPGRTLSPKPTRIPTPIPSSLNVSLESSKKPEIFHERHIPTPETGPNKPSKNNILKSTQ 654
Query: 588 IPIVNERKQTT 620
+P+ ++K +T
Sbjct: 655 VPVTPKQKSST 665
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 31.5 bits (68), Expect = 0.13
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Frame = +3
Query: 81 TPDSLSDNEAASGLGTRYRKPS-VPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSL-- 251
T S S + ++ T PS + STL P TS P + + S P+ + S+LS
Sbjct: 282 TSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPSSLSTEV 341
Query: 252 ----------DSTDDATTPSRIPMRKVTNTKTS--IARAAANASK--LGVSTPNGSRPRT 389
D++ T + + T T TS I+ N S G S P+G +P
Sbjct: 342 EVEYFTKTITDTSSIVTYSTGVETLYETETITSSEISSIIYNFSTPISGSSFPDGFKPIN 401
Query: 390 PTGYLTPASGRQRTPSGSTTPVRSGQQTAVS 482
PT + + S ++ PS +T P S T +
Sbjct: 402 PTSFPSLTSSTKKIPS-TTLPTSSKMITTTT 431
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 225 SRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSR-PRTPTGY 401
S G+ + + + ++ S+ + K + + + A+ S +G++T +G + PRTP G
Sbjct: 94 SNEGNEKNNEENNVVSSDSKEAITKESGAELESSEPASTNSNVGMTTRSGRQSPRTPIGS 153
Query: 402 LTPAS 416
TP S
Sbjct: 154 TTPKS 158
Score = 31.1 bits (67), Expect = 0.18
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3
Query: 402 LTPASGRQ--RTPSGSTTPVRSGQQTAVSRLLRKPVGRVGVRHAGDARRPPR--PRHAQN 569
+T SGRQ RTP GSTTP +S +R R VG H ++ P+ P+ A N
Sbjct: 138 MTTRSGRQSPRTPIGSTTP-KSSHSPPSTRKRRGSVGTTAT-HTKRSKNAPKTSPKDASN 195
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 30.3 bits (65), Expect = 0.31
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Frame = +3
Query: 135 RKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTK 314
++P+ P + S +R S+ S P S ++ ++ + + P+ +T
Sbjct: 493 QEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGGKKSAIEAAAPIPTSADTV 552
Query: 315 TSIARAAANASKLGVSTPNGSR----PRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVS 482
S AA + S + +P + P + T TP S + +G+T P + TA +
Sbjct: 553 ES-KHAAGSGSATTIPSPGSATTKPTPGSATTKPTPVSATEEHAAGTTKPAPAAGATATA 611
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 29.5 bits (63), Expect = 0.54
Identities = 30/98 (30%), Positives = 42/98 (42%)
Frame = +3
Query: 156 STLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAA 335
+ +TPG + S G+ +G SR SN S + + S R S A+A
Sbjct: 196 NVITPGVT---STTGAPSGKASLSRAASNSSTSARAGISVDSLFGKR-------SAAQAM 245
Query: 336 ANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTT 449
A VSTP G+ PR + LT S PS +T+
Sbjct: 246 ATVVP-SVSTPGGTPPRFASPALTVESMVHAAPSTTTS 282
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 29.1 bits (62), Expect = 0.72
Identities = 31/131 (23%), Positives = 48/131 (36%)
Frame = +3
Query: 84 PDSLSDNEAASGLGTRYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTD 263
P + N +S + KP+ +T TP + GS G A + S + S ST
Sbjct: 136 PSGSTFNFGSSNNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGTTS-NAPPASSTSTT 194
Query: 264 DATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGS 443
AT K + ++ + + + G S +P T + P S TPS S
Sbjct: 195 PATGSGGFSFGKPASLGSTNNASTSTTANSGFSF---GKPATTS---APGSNTTVTPSSS 248
Query: 444 TTPVRSGQQTA 476
T + A
Sbjct: 249 ITGTNDSKPAA 259
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.7 bits (61), Expect = 0.95
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Frame = +3
Query: 87 DSLSDNEAASGLGTRYRKPSVPRSTLTPGTS--RPGSRAGSRAGSKPPSRHGSNLSLDST 260
++ + +EA S + P V S +T TS + S + S+ ++ + S+LSL +
Sbjct: 474 ENYTSSEAFSTSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNA 533
Query: 261 DDA-TTPSR-IPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTP 434
+ +TPS IP +N+ S+ +S L +S+P S T T TPA TP
Sbjct: 534 KSSLSTPSTTIP---TSNSSVSLQ----TSSSLIISSPIISSSLTATSTSTPALTHSITP 586
Query: 435 SGST 446
S ++
Sbjct: 587 SNTS 590
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.95
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Frame = +3
Query: 108 AASGLGTRYRKPSVPRST-LTPGTSRP--GSRAGSRAGSKPPSRHGSNLSLDSTDDATTP 278
+ S GT P + ST T TS P G+ + PP+ + L+ T + TT
Sbjct: 375 STSSTGTS-SSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLT---TTNCTTS 430
Query: 279 SRIPMRK--VTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTP 452
+ +P VT+T + + S STP S P T T T S + ++TP
Sbjct: 431 TSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Query: 453 V 455
+
Sbjct: 491 L 491
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 28.7 bits (61), Expect = 0.95
Identities = 25/113 (22%), Positives = 43/113 (38%)
Frame = +3
Query: 144 SVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSI 323
S ++ + T+ P S A +K P ++ + ++ + + R T + T
Sbjct: 198 SQQKAPSSSSTATPASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLP 257
Query: 324 ARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVS 482
LG +TP P T + L ASG + G T V + T+ S
Sbjct: 258 WSPRVFGPTLGYNTPPFGYPPTTSSALPNASGSSSSFFGLPTAVSASAGTSFS 310
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 28.7 bits (61), Expect = 0.95
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Frame = +3
Query: 135 RKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTK 314
R+P + T P TSR + S G P +N S S + A T T +
Sbjct: 179 RRPGLSSYTPGPSTSRRSISSSSNLGGN-PGLIANNPSA-SKNFAFTSGSSSTNNSTTSS 236
Query: 315 TSIARAAANASKLGVSTPNGSRPRTPTG-YLTPASGRQRTPSGST 446
+S+A + SK + P S + G LTP+ +GST
Sbjct: 237 SSMANGLQSISKHSAAFPLLSNATSFFGENLTPSLAASTASTGST 281
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 129 RYRKPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRI 287
R K ++L+P + GS S+ S++ SNL+ S DD + S++
Sbjct: 297 RETKKKNSSTSLSPDPTSDNFEWGSWVSSQDTSKNSSNLASASVDDVSEESQV 349
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 399 YLTPASGRQRTPSGSTTPVRS 461
Y P + QRTPSGS TP+ S
Sbjct: 346 YNPPRAPLQRTPSGSLTPLSS 366
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 366 PNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPVGRVGVR 521
P RTP+G LTP S R P+ ++ P QT S + PV R ++
Sbjct: 349 PRAPLQRTPSGSLTPLSSR---PAHTSLPPIPTVQTTSSNV--PPVNRPSLK 395
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/87 (21%), Positives = 36/87 (41%)
Frame = +3
Query: 225 SRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTGYL 404
S +G+N + +A+T +R + + +A ANA + ++ S P TP G
Sbjct: 196 SANGNNTGTSTPVNASTDTR--KSTASTPQLQQTQAQANAPQQRINPETSSVPETPVGVS 253
Query: 405 TPASGRQRTPSGSTTPVRSGQQTAVSR 485
+ T ++ +SG V +
Sbjct: 254 AANVSNESTELATSATQQSGLANNVEK 280
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 3.8
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Frame = +3
Query: 156 STLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAA 335
ST P T + + ++A P+ S ++ +++T + K T ++ A
Sbjct: 433 STELPETGK--EQPPNKAEPAVPTEASSTKPSEAAEESTPRFSVRPNKFTGSRAGFVAAL 490
Query: 336 ANASKLGVSTPN--GSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPVGR 509
+ + G + ++ ++P+G +PASG T + ++A+ P R
Sbjct: 491 ESRLQKGPLMRSFVPNKSKSPSGTKSPASGETSEAGVKETETTTSSESAL------PDAR 544
Query: 510 VGVRHAGDARRPP 548
R G RRPP
Sbjct: 545 KS-RARGPVRRPP 556
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.8
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 138 KPSVPRSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDAT-TPSRIPMRKVTNTK 314
KPS P STLT G++ S +P S+ + DDAT ++ +R + +T+
Sbjct: 47 KPSTPLSTLTNGSTIQQSMTNQ---PEPTSQVPPISAKPPMDDATYATQQLTLRALLSTR 103
Query: 315 TS---IARAAANASKLGVST 365
+ I +A N ++L +T
Sbjct: 104 EAGIIIGKAGKNVAELRSTT 123
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 381 PRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRK--PVGRVGVRHAGDARRPP-R 551
PR+ G +P+ S +PVRS + SR R P R R+ +R PP
Sbjct: 122 PRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYS 181
Query: 552 PRHAQNHR 575
RH+++ R
Sbjct: 182 SRHSRSRR 189
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 5.0
Identities = 33/123 (26%), Positives = 51/123 (41%)
Frame = +3
Query: 219 PPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPNGSRPRTPTG 398
PP +H S L + +TP S A + SK S P+ S+P P
Sbjct: 61 PPPKHASQLRAGGSSTGSTP----------RTASPAVGNQDYSKPSYSQPSYSQPSQPP- 109
Query: 399 YLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPVGRVGVRHAGDARRPPRPRHAQNHRE 578
PA + TPS P R G + +V L ++ V VR ++ PP P ++ +
Sbjct: 110 -KEPALPSRGTPS---LPSRPGSRPSV--LNQEQVPPPPVRPNVMSQMPPPPSYSSSGSY 163
Query: 579 TRT 587
++T
Sbjct: 164 SQT 166
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 369 NGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKP 500
NGS P + + +PAS PS + S LLR+P
Sbjct: 293 NGSSPTSESALNSPASSVSSLPSLGASQTTDSSSLNQSSLLRRP 336
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 231 HGSNLSLDSTDDATTPSRIPMRKVTNTKTSIA 326
H +L + + + +PS+IP+RK K +++
Sbjct: 340 HNDHLKIPQSPSSLSPSKIPIRKKRKLKDTVS 371
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 144 SVPRSTLTPGT--SRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPS 281
S P ST PG+ S P + S PPS G+N++ +S ++A T S
Sbjct: 69 SSPPST-APGSAGSTPKTTPVSLNAGVPPSNTGANITTNSNNNAQTIS 115
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 271 VASSVLSKDKFDPCLEGGFDPALDPARE-PGRDVP 170
V SV S +KF CL+ G+D + +E P + +P
Sbjct: 188 VVGSVGSDEKFKICLDSGYDSVFNYKKESPFKALP 222
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = -2
Query: 464 SRPHRRRAARWGPLSSTSRRQVTGRRPRTGAVRRANPKLACIGGSTRDRSLRIRDF 297
S+P RRR R P + + +G R +L C +R + ++ DF
Sbjct: 61 SKPKRRRGERIPPSKRIRKAIAYVNKYASGCFGRVERRLVCTRSISRHSNQKLLDF 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,464
Number of Sequences: 5004
Number of extensions: 57974
Number of successful extensions: 228
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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