Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3666
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.25 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.1  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   3.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
 Frame = +3

Query: 171 GTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKV-----TNTKTSIARAA 335
           G +   S +G+ A  +PP+   SN     ++  +TP+ +   K+      +   S+A  A
Sbjct: 257 GNNEDSSDSGAAASDRPPASASSNEHEAESEHTSTPNFLSEAKIFPPTPGSFNFSMAALA 316

Query: 336 ANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPS 437
              + L V  P       P      + G    PS
Sbjct: 317 TEHTPLSVKFPGMGHGLQPPDLAGTSQGSAGLPS 350


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 327 RAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRL 488
           R +   SK+ V    G   R  +GY   A G+QR      T  +S    A+  L
Sbjct: 266 RISNEMSKVKVIDMTGPEQRILSGYHAIAGGQQRPDENVVTDKKSKVNFALPEL 319


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 595 IGMVRVSLWFWAW 557
           + ++ +SLWF AW
Sbjct: 279 VALMTISLWFMAW 291


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 595 IGMVRVSLWFWAW 557
           + ++ +SLWF AW
Sbjct: 29  VALMTISLWFMAW 41


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 431 GPLSSTSRRQVTG 393
           GPLSST   QVTG
Sbjct: 393 GPLSSTGLAQVTG 405


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 348 KLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVS 482
           +L       S+P + T  +TP+  RQR    +  P+ + +  A S
Sbjct: 79  ELQADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPS 123


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 306 NTKTSIARAAANASKLGVSTPNGSRPRTPTGYLTPASGRQRTPSGSTT-PVR 458
           +T  ++    A  + L  ++  G+ P TP+  +  ++      +G+TT P R
Sbjct: 214 STPATVTTTGATTT-LPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTR 264


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = +3

Query: 141 PSVP-RSTLTPGTSRPGSRAGSRAGSKPPSRHGSNLSLDSTDDATTPSRIPMRKVTNTKT 317
           PS+  RS L  G+S PG+         PPS   S ++  +T       R    K    K 
Sbjct: 381 PSIRNRSGLVSGSSTPGTGREHDPAKFPPSFRISRVAAYNTYGRNAGLRYRGPKQNKPKV 440

Query: 318 SIARAAANASKLGVSTP 368
            +      AS L VS P
Sbjct: 441 -LHAIRRGASILRVSMP 456


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 73  VQEHQTRSVITKRRADLEQDTGSP 144
           VQ+HQ  +V  +  +D++   GSP
Sbjct: 255 VQQHQPVTVNRQLNSDVQPGHGSP 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,356
Number of Sequences: 438
Number of extensions: 4169
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)