Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3663
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080...    75   3e-14
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891...    66   1e-11
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670...    60   8e-10
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    29   2.2  
12_02_0312 + 17395716-17398112                                         29   2.9  
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893...    27   6.8  

>01_06_0134 +
           26805329-26805430,26807130-26807230,26807876-26808032,
           26808386-26808582,26809188-26809287,26809501-26809536
          Length = 230

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 44/128 (34%), Positives = 66/128 (51%)
 Frame = +1

Query: 91  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 270
           ++DADV KQI+ M+ FI Q                FNIEK +LV+ ++ KI         
Sbjct: 1   MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 271 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 450
                  I+ S  LN +R+KVL+ ++D V ++ ++A K+L  V  +   Y  LL  L+VQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120

Query: 451 ALFQLMEP 474
            L +L EP
Sbjct: 121 GLLRLKEP 128


>05_05_0231 +
           23488588-23488689,23488775-23488875,23489012-23489168,
           23489365-23489594,23489696-23489795,23489878-23489916
          Length = 242

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 41/120 (34%), Positives = 60/120 (50%)
 Frame = +1

Query: 91  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 270
           ++DADV KQI+ M+ FI Q                FNIEK +LV+ ++ +I         
Sbjct: 1   MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60

Query: 271 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 450
                  I+ S  LN AR+KVL+ ++  V  + ++A K L  V KD   Y ++L  LIVQ
Sbjct: 61  QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120


>01_01_0858 -
           6699126-6699128,6699219-6699318,6700052-6700278,
           6701032-6701188,6701422-6701522,6702147-6702251
          Length = 230

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 36/120 (30%), Positives = 57/120 (47%)
 Frame = +1

Query: 91  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 270
           ++D DV +Q+K M  FI Q                F IEK +LV+ ++ +I         
Sbjct: 2   MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61

Query: 271 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 450
                  I+ S  LN +RL+VL+ ++D   ++L+ A K L  + +D  +Y  LL   IVQ
Sbjct: 62  QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121


>10_08_0762 -
           20410681-20411834,20411999-20412098,20412200-20412298,
           20412563-20414133,20415080-20415128
          Length = 990

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 319 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 453
           +RL++LK R+D++ N LD+A K+  E   D   + E  V   +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869


>12_02_0312 + 17395716-17398112
          Length = 798

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 292 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 435
           ++ +N+ N   L VLK+  D + + L      L+  PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430


>05_06_0131 -
           25888434-25888931,25889105-25889155,25889249-25889331,
           25889733-25889826,25890188-25890310,25890909-25891154
          Length = 364

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 370 QVHYVRDLHELSVPSDELGSACSKIGSSSEVQP 272
           Q H  +   E S P   L S+C +I SS+   P
Sbjct: 219 QTHSAKSCEESSEPFSRLASSCHQIQSSNRTHP 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,594,848
Number of Sequences: 37544
Number of extensions: 230085
Number of successful extensions: 624
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)