Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3662
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    79   5e-16
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    30   0.28 
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    30   0.28 
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    28   1.5  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    27   3.4  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   4.5  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   7.9  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
 Frame = +3

Query: 204 PFKTILKAMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQK---IWVRENYKAMDXX 374
           PFKT   A+H    +   TI+V  K+ +++++    + LKK +K      ++  KA +  
Sbjct: 38  PFKT---AIHALETDANCTIFV-KKNGSEEFEPITTNALKKAKKGVEQAAKKKAKAAEAE 93

Query: 375 XXXXXXXXX----RSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRL 542
                         ++ L+ AK I+L+E    P A  + I ++T  R  R+ + GWVHR+
Sbjct: 94  AAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHRM 153

Query: 543 RRQGKSLAFLTLRDGTGYLQCVLHGTLCQ--TYNALVLSTESSVGL 674
           R Q K + F+ LRDGTG+LQCVL G +    +Y+ + L  ES+V L
Sbjct: 154 RTQ-KGIIFIILRDGTGFLQCVLSGKVYDRASYDFINLGPESTVCL 198


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 498 HRGQRICIRGWVHRLRRQGKSLAFLTLRDGT 590
           H G+ I I GWV  +R+  K++ F  + DGT
Sbjct: 18  HNGELISINGWVRSIRKL-KNVCFAMVSDGT 47


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 582 DGTGYLQCVLHGTLCQTYNALVLSTES 662
           D  GYL+C+LHG   + YN  +   +S
Sbjct: 295 DHLGYLECILHGDSAKRYNMSIEKVDS 321


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 123 VGNLSLSEIYTSXXXXXXXXXXXXXEKPFKTILKAMHHAGKEPFP 257
           VGN+ LS I  +                FK  L+ +   GK+PFP
Sbjct: 113 VGNIELSRIVNADVRLDSSKFDIGIRPSFKNALEELTKKGKKPFP 157


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 594 YLQCVLHGTLCQTYNALVLSTESSVG 671
           YL C+L G L   + ALV +T +S+G
Sbjct: 127 YLVCLLFGMLGSMWFALVKTTSNSIG 152


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 426 KKILLQEDPSLPKATVVKICETTEHR 503
           +KILL E P  P A   K+CET   R
Sbjct: 101 RKILLTEPPMNPVANREKMCETMFER 126


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 589 LGTYSAFYMVHFVRPTML*SYLQSHLWVL 675
           L TYS   +     P++L S +  H WVL
Sbjct: 365 LDTYSLLVLEIMKHPSLLISAISQHFWVL 393


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +3

Query: 450  PSLPKATVVKICETTEHRGQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQCVLHGTLCQ 629
            PSL +   + I + +  + + I ++ W+H ++   K      L  G  +   +L  T   
Sbjct: 1115 PSLNRIRDIVIVDNSHLKARLISLKAWLHLMKYVIKEGTDYELAQGMEWFNSILKVTF-D 1173

Query: 630  TYNALVLSTESSVG 671
             Y AL  S  +SVG
Sbjct: 1174 EYLAL-FSNGTSVG 1186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,871
Number of Sequences: 5004
Number of extensions: 55919
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)