Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3660
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 290 1e-79
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 158 5e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 155 4e-39
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 153 2e-38
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.033
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 29 0.71
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 0.94
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 28 1.2
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.2
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.9
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 3.8
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 3.8
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.0
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 6.6
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 6.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.8
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 8.8
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 8.8
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 8.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 290 bits (711), Expect = 1e-79
Identities = 129/187 (68%), Positives = 150/187 (80%)
Frame = +1
Query: 58 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 237
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 238 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 417
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 418 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 597
R+E+E+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 598 EPYNATL 618
EPYNATL
Sbjct: 181 EPYNATL 187
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 158 bits (384), Expect = 5e-40
Identities = 76/189 (40%), Positives = 109/189 (57%), Gaps = 2/189 (1%)
Frame = +1
Query: 58 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 231
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 232 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 411
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 412 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 591
+R+ +++C LQGF ++ EY + +SV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 592 VVEPYNATL 618
VVEPYN+ L
Sbjct: 181 VVEPYNSVL 189
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 155 bits (377), Expect = 4e-39
Identities = 71/189 (37%), Positives = 116/189 (61%), Gaps = 3/189 (1%)
Frame = +1
Query: 61 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 240
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 241 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 414
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 415 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDT 591
+ +E++ D L+GF ++ + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 592 VVEPYNATL 618
VV+PYN+ L
Sbjct: 182 VVQPYNSLL 190
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 153 bits (371), Expect = 2e-38
Identities = 74/193 (38%), Positives = 110/193 (56%), Gaps = 6/193 (3%)
Frame = +1
Query: 58 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 219
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 220 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 399
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 400 SVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 579
SVL+ +R+ +++C LQGF ++ EY + +SV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 580 VSDTVVEPYNATL 618
VS +VVEPYN+ L
Sbjct: 181 VSTSVVEPYNSVL 193
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.1 bits (72), Expect = 0.033
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = +2
Query: 299 SDRSSVRTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSV 478
S S++ ++S S S P+T+ +T LSS + SS S+ + + +I +S+
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT 284
Query: 479 AAPGPVWAPSSSQRSVKST 535
+ + + SSS S ST
Sbjct: 285 STSSTISSSSSSSSSPTST 303
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.71
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = +2
Query: 308 SSVRTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAP 487
SS T+SFSD A + P+ T+ T S++ S + N ++ N PS P
Sbjct: 132 SSPATSSFSDPKAFSAGVPKFTSD------TSSTVSSTPSLNHSL----QNSMPPSTPTP 181
Query: 488 GPVWAPS 508
PVWAP+
Sbjct: 182 PPVWAPT 188
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 0.94
Identities = 23/100 (23%), Positives = 47/100 (47%)
Frame = +2
Query: 308 SSVRTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAP 487
+ V T+ S S +TT ++ SS T ++ S+ + + + + +S+ S ++
Sbjct: 120 NGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSS 179
Query: 488 GPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHT 607
+ SSS S S+ + S + + S P + SS+H+
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHS 219
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +2
Query: 362 PRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPT 541
PR++T++ L S++ S S+ Q + +S L+ PS AP P + SSS T
Sbjct: 219 PRESTEKPLLSVSALSS-SSHLQPTSATSSSSRLY-PSRPAPTPPASSSSSPLLSSQTVK 276
Query: 542 ES*THTQ*SPRPKYQTLSSNHTMR 613
+ ++ P P + S+++ +R
Sbjct: 277 TTTSNASRQPSPLVSSKSTDNIIR 300
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 361 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 450
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 97 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 198
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 292 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 393
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 299 SDRSSVRTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SA 421
S SS T+ S + + T P ++ V+SS++ SSM S+
Sbjct: 342 SSSSSASATATSSAESSIATSPITSSSNVVSSISTSSMDSS 382
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 434 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 529
LA+ Y + + +V APG +W+P+ +R K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 41 KITYTK*GKSFIYRPANVV 97
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 5.0
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +2
Query: 317 RTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYR-ASNLHIPSVAAPGP 493
R SF PA + PR S + M N ++ AY+ + L P++ A
Sbjct: 627 RQYSFQPRPATPSNPPRSLPPP--SGQVNAPMSQTPNP-ISFAYQHGTPLATPTMRANSF 683
Query: 494 VWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNH 604
P+SS ++ T + HT PK T +S H
Sbjct: 684 NSYPASSAEPIRRPATTTVGHTPNLYSPKTNTYNSRH 720
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 313 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDC 444
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 350 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 255
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 8.8
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 320 TTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVW 499
TTS++ + + A++ ++ SSLT SS ++ + N + ++ + S +A
Sbjct: 60 TTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSL 119
Query: 500 APSSSQRS 523
A SS+ S
Sbjct: 120 ASSSTTSS 127
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 452 ASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES 547
A+N+H+ SVAA PS+ V +T T S
Sbjct: 172 AANVHVLSVAASPNPSTPSNGPAPVSTTATPS 203
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 455 SNLHIPSVAAPGPVWAPSSSQRSVKSTPTE 544
S +H S A PGP+ PS+ ST E
Sbjct: 241 SPMHTYSSAVPGPISVPSAPYGRASSTIAE 270
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 317 RTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLA 439
+TTS +PA + + P TT + SSM +N +A
Sbjct: 942 KTTSEGTAPAASASAPAPTTSAFSFGASNSSMNKEENTPMA 982
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,886
Number of Sequences: 5004
Number of extensions: 50423
Number of successful extensions: 178
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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