Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3660
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.2  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 394 VDSVLDVVRKESESCDCLQG 453
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -3

Query: 418 GLHRGPSQRAQHPLCSVPWPSCCRRRTVRKRSCPDGRSVRKVPSGQSPWCRA 263
           G+H    Q+AQ     V  P      + ++++ P G +   +PS   PW R+
Sbjct: 220 GMHPRQQQQAQQHQGVVTSPL-----SQQQQAAPQGAASANLPSPLYPWMRS 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,815
Number of Sequences: 438
Number of extensions: 3734
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)