Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3659
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    28   1.5  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.5  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.9  
SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   7.8  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 329 SRSINSAFRYYKHRSPSSSNPSLATN-GSTSELTHRHSPLSFS 204
           S+S+NS    +  R+P+S+  S++ + G+     H+H+ ++ S
Sbjct: 222 SKSVNSLSSNFSARTPASNQSSVSEDFGAAPNCDHKHNSVTLS 264


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 172 PVVDSAKHCSC*GQCYNHS 116
           P++D   + SC G CYN S
Sbjct: 900 PIIDGVDYLSCNGACYNPS 918


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 281 SSSNPSLATNGST-SELTHRHSPLSFSPDLL 192
           S+S+PS   +GS+ S   + ++PL FS DLL
Sbjct: 382 SASSPSYVPSGSSFSVRANLYNPLDFSIDLL 412


>SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = -1

Query: 597 FILYGIYFSHVYLSIYFYV 541
           F+L+ + F H++L ++F++
Sbjct: 83  FLLFYVSFPHIFLGLFFFI 101


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 287 SPSSSNPSLATNGSTSELTHRHSPLSFSPDLLSESRYRS 171
           SPSSS+  L  + S++ LT+  +     P  L    YRS
Sbjct: 263 SPSSSSSPLKKDSSSNSLTYEPALTDHKPQYLVLCVYRS 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,468
Number of Sequences: 5004
Number of extensions: 41604
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)