Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3659
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           31   0.86 
02_02_0537 + 11308195-11309667                                         31   0.86 
01_05_0645 - 23899579-23904483                                         31   0.86 
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952...    29   4.6  
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301     29   4.6  
08_01_1086 - 11150017-11151564                                         29   4.6  
04_04_0933 + 29495656-29496972,29497244-29497819,29499414-294996...    29   4.6  

>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -2

Query: 323  SINSAFRYYKHRSPSSSNPSLATNGSTSELTHRHSPLSFSPDLLSESRYRSGGRFC 156
            +IN+  + + H  PSSS     T   T  + H H P SF P  +  ++ ++  R C
Sbjct: 986  NINNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRTQPKAPCRSC 1040


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -2

Query: 323 SINSAFRYYKHRSPSSSNPSLATNGSTSELTHRHSPLSFSPDLLSESRYRSGGRFC 156
           +IN+  + + H  PSSS     T   T  + H H P SF P  +  ++ ++  R C
Sbjct: 144 NINNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRTQPKAPCRSC 198


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -2

Query: 323  SINSAFRYYKHRSPSSSNPSLATNGSTSELTHRHSPLSFSPDLLSESRYRSGGRFC 156
            +IN+  + + H  PSSS     T   T  + H H P SF P  +  ++ ++  R C
Sbjct: 1263 NINNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRTQPKAPCRSC 1317


>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
            9527440-9527767
          Length = 1505

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 323  SINSAFRYYKHRSPSSSNPSLATNGSTSELTHRHSPLSFSPDLLSESRYRSGGRFC 156
            +IN+  + + H  PSSS     T   T  + H H P  F P  +  ++ ++  R C
Sbjct: 1134 NINNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNLFLPQYILRTQPKAPCRSC 1188


>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
          Length = 1116

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 323 SINSAFRYYKHRSPSSSNPSLATNGSTSELTHRHSPLSFSPDLLSESRYRSGGRFC 156
           +IN+  + + H  PSSS     T   T  + H H P  F P  +  ++ ++  R C
Sbjct: 745 NINNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNLFLPQYILRTQPKAPCRSC 799


>08_01_1086 - 11150017-11151564
          Length = 515

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 323 SINSAFRYYKHRSPSSSNPSLATNGSTSELTHRHSPLSFSPDLLSESRYRSGGRFC 156
           +IN+  + + H  PSSS     T   T  + H H P  F P  +  ++ ++  R C
Sbjct: 144 NINNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNLFLPQYILRTQPKAPCRSC 198


>04_04_0933 +
           29495656-29496972,29497244-29497819,29499414-29499650,
           29499736-29500048,29500191-29500300
          Length = 850

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 326 RSINSAFRYYKHRSPSSSNPSLATNGSTSELTHRH--SPLSFSPDLLSESRYR 174
           R + +A  +   R P  SNP  A   ++  L HR    P     D+L+ SR R
Sbjct: 10  RDLLAADGFRNRRKPPDSNPPAAPRTTSMPLQHRRPSRPARSQSDVLTRSRLR 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,849
Number of Sequences: 37544
Number of extensions: 257740
Number of successful extensions: 603
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)