Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3659
         (687 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.                   32   1.7  
BC109211-1|AAI09212.1|  632|Homo sapiens gamma-aminobutyric acid...    30   8.9  
BC109210-1|AAI09211.1|  632|Homo sapiens gamma-aminobutyric acid...    30   8.9  
AF189259-1|AAF70380.1|  632|Homo sapiens GABA-A receptor theta s...    30   8.9  
AF144648-1|AAD51172.1|  627|Homo sapiens GABA-A receptor theta p...    30   8.9  

>Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.
          Length = 586

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 23/57 (40%), Positives = 29/57 (50%)
 Frame = -2

Query: 332 SSRSINSAFRYYKHRSPSSSNPSLATNGSTSELTHRHSPLSFSPDLLSESRYRSGGR 162
           SS S +S+         SSS  S +++ STS  + R S  S S    SESR RS GR
Sbjct: 451 SSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSTSSSSESRSRSRGR 507


>BC109211-1|AAI09212.1|  632|Homo sapiens gamma-aminobutyric acid
           (GABA) receptor, theta protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 674 NCISSYFFCILSCIFLVFICI*SYVSLSYMVF 579
           +CI +    IL C+F VF+ +  YV ++Y+ +
Sbjct: 323 SCIKAIDIYILVCLFFVFLSLLEYVYINYLFY 354


>BC109210-1|AAI09211.1|  632|Homo sapiens gamma-aminobutyric acid
           (GABA) receptor, theta protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 674 NCISSYFFCILSCIFLVFICI*SYVSLSYMVF 579
           +CI +    IL C+F VF+ +  YV ++Y+ +
Sbjct: 323 SCIKAIDIYILVCLFFVFLSLLEYVYINYLFY 354


>AF189259-1|AAF70380.1|  632|Homo sapiens GABA-A receptor theta
           subunit protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 674 NCISSYFFCILSCIFLVFICI*SYVSLSYMVF 579
           +CI +    IL C+F VF+ +  YV ++Y+ +
Sbjct: 323 SCIKAIDIYILVCLFFVFLSLLEYVYINYLFY 354


>AF144648-1|AAD51172.1|  627|Homo sapiens GABA-A receptor theta
           protein.
          Length = 627

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 674 NCISSYFFCILSCIFLVFICI*SYVSLSYMVF 579
           +CI +    IL C+F VF+ +  YV ++Y+ +
Sbjct: 318 SCIKAIDIYILVCLFFVFLSLLEYVYINYLFY 349


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,520,969
Number of Sequences: 237096
Number of extensions: 1487870
Number of successful extensions: 2686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2685
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)