Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3659
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical...    29   2.4  
Z50044-6|CAA90358.1|  223|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF100663-3|AAC68980.1|  529|Caenorhabditis elegans Udp-glucurono...    28   7.2  
Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    27   9.5  

>AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical
           protein Y46G5A.10 protein.
          Length = 732

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 302 YYKHRSPSSSNPSLATNGSTSELTHRHSPLSFSPDLLSESRYRSGG 165
           Y  H+S + S  SL  N  T EL +         D + +SRY S G
Sbjct: 602 YRSHKSVTPSEKSLPRNSETPELHYTRGISKTPSDRVEKSRYLSRG 647


>Z50044-6|CAA90358.1|  223|Caenorhabditis elegans Hypothetical
           protein F22B5.6 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 671 CISSYFFCILSCIFLVFICI*SYVSLSYMVFI 576
           C+++ F CIL+ + +V I   ++ +  Y+VF+
Sbjct: 84  CVTTAFLCILTSLIIVDILFKTHFTFRYVVFM 115


>AF100663-3|AAC68980.1|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein20 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 659 YFFCILSCIFLVFICI*SYVSLSYMVFIFHMCI 561
           YFF  +  IF++   I  YVS   + F F  CI
Sbjct: 485 YFFLDIIAIFILITLIFLYVSFRIVKFAFRKCI 517


>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 495 GRGISYWGRCYILINLHKNIYLNTHVKNKY 584
           G+ I +W +C I + L ++ Y    ++N Y
Sbjct: 522 GQAIQFWTQCGIKLPLQEDFYFRKAMRNNY 551


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,904
Number of Sequences: 27780
Number of extensions: 230111
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)