Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3658
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.4  
SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces pombe...    26   4.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   7.7  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   7.7  

>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 391 TKYKLFTILFAHEFATKLVIYVMTSSRITY 480
           T++ +  + F HE   K+ IY++++S  TY
Sbjct: 168 TQFSVSEVFFEHERGIKIGIYILSTSVGTY 197


>SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 239 CTLSSVGSSKQLTTYEFYYNT*IPF 165
           C L  +G  + ++TY FY NT + F
Sbjct: 60  CFLGLLGVEEDISTYAFYSNTKVKF 84


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 158  TNGKLRILIFLIDVTCNFIMRFSNDVGSGITILSGTFNVERLLFMY 21
            TN ++R   F + +  N I+   N+V    +IL G    +RLLFM+
Sbjct: 1410 TNPEIRKATFNVCLAVNTIV---NNVDETFSILGGLNEGQRLLFMH 1452


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 231 IQRWLFKATNNIRILLQHLNSIYTNKWEAKDS 136
           I+ W ++    +RI   H+N+ Y+  W+   S
Sbjct: 247 IRLWDYRRNRVVRIFDSHVNTRYSMSWDCYSS 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,202
Number of Sequences: 5004
Number of extensions: 55643
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)