Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3658
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333...    29   4.5  
09_04_0523 + 18310695-18311837,18312050-18312109,18312232-183123...    29   4.5  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    28   7.9  
01_01_0241 + 1992553-1993231,1993820-1993918,1994611-1994649,199...    28   7.9  

>12_02_1283 -
           27532143-27532517,27532602-27532906,27533053-27533311,
           27534412-27534618,27534726-27535181,27535866-27535963,
           27536657-27536785,27537371-27537605,27538932-27539039,
           27539110-27539160,27539261-27539445,27540207-27540274,
           27541535-27541600,27541678-27541730,27542536-27542653,
           27542743-27542844,27543525-27543682,27543763-27543840,
           27543978-27544069,27544308-27544458
          Length = 1097

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 530 GNCSVYYLAYVFNLTFLYVILELVITYITSLVA 432
           G  SV +L ++FN T + + L L ++YI    A
Sbjct: 202 GIASVLWLGFIFNDTIIEIALTLAVSYIAFFTA 234


>09_04_0523 +
           18310695-18311837,18312050-18312109,18312232-18312324,
           18312675-18312731,18313321-18313359
          Length = 463

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -1

Query: 564 LICIYKSYLHRGKLFCVLSSVCI*FNILIRNS*TSHYVYYKFGRKFVSKKNRKQFIFR*N 385
           LIC++ S     K+  + +  C+     +RNS T H+ YY FG   V+K+ +     R +
Sbjct: 116 LICLH-SDKSTIKIANLATGECMHLVKPVRNSKTDHFSYYSFGFHPVTKQYKVMHFLR-D 173

Query: 384 NVIHV 370
             +HV
Sbjct: 174 EHLHV 178


>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
            14794906-14794986,14795078-14795147,14795267-14795337,
            14795427-14795594,14796030-14796074,14796449-14796511,
            14796594-14796869,14797858-14797971,14798099-14798225,
            14798315-14798484,14798743-14798841,14799577-14799630,
            14801487-14801522,14801741-14801844,14801952-14802186,
            14802377-14802609,14802846-14803346,14803422-14803716,
            14805796-14805881,14806952-14807064,14807303-14807385,
            14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 603  PHFYTSKHQSFALLICIYKSYLHRGKLFCVLSSVC 499
            P+ +++ H  F ++ C   SY++ G+     +SVC
Sbjct: 1242 PYRFSNLHNKFVVIGCNTLSYIYNGEYTTACASVC 1276


>01_01_0241 +
           1992553-1993231,1993820-1993918,1994611-1994649,
           1994806-1995857
          Length = 622

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 516 HRTVSHGANKIYRCILKEQNSDVLMCKNEESSK 614
           H T ++  N+IY C++K+  +  ++ + EE +K
Sbjct: 547 HSTGNYFPNRIYDCLVKDLQTHAIITEEEEIAK 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,147
Number of Sequences: 37544
Number of extensions: 278311
Number of successful extensions: 456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)