Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3658
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.2  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 197 YEFYYNT*IPFTRTNGKLRILIFLIDVTCNFIMRFSNDVGSGITIL 60
           Y +  N  I   R NGK  + I   D   + +   SN +G+G  +L
Sbjct: 60  YNYKNNVPIDVDRWNGKTFVTILRNDGVPSSLNVISNKIGNGGPLL 105


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 1   YDSSHDIYINSKRSTLNVPERIVIPEPTSLLKRIMKLHVTSIKK 132
           Y S + + ++S  STLN+P   +  +    ++ I  ++ TS  K
Sbjct: 375 YSSQNYLTVHSFPSTLNIPSVKIDEDQKCSIESITSVNSTSSPK 418


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = -2

Query: 242 PCTLSSVGSSKQL----TTYEFYYNT*IPFTRTNGKLR 141
           PC + SV  S +        EFYYN  IP  +   KLR
Sbjct: 620 PCAIKSVVPSDESHWNDLAMEFYYNRSIPDHKRIVKLR 657


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = -2

Query: 242 PCTLSSVGSSKQL----TTYEFYYNT*IPFTRTNGKLR 141
           PC + SV  S +        EFYYN  IP  +   KLR
Sbjct: 658 PCAIKSVVPSDESHWNDLAMEFYYNRSIPDHKRIVKLR 695


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 326  HVTHSKLVTFRFYPRT*ITLFQRNINCLRFF 418
            HVT   +  ++ +P+T   + Q ++N L+ F
Sbjct: 1004 HVTPELIYEYQIHPKTLNEVLQADMNALKNF 1034


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 134 IFLIDVTCNFIMRFSNDVGSGITILSGTFNVERLLFMY 21
           IF+    C +I   +ND G  +    G+F +  L+ ++
Sbjct: 228 IFVPVKPCPWICELTNDAGYVVYSALGSFYIPMLVMLF 265


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 380  TLFQRNINCLRFFLLTNLRPNL*Y 451
            TL   ++   R F++TNL+P+  Y
Sbjct: 1545 TLVSNSVKMQRRFVVTNLQPSSVY 1568


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 380  TLFQRNINCLRFFLLTNLRPNL*Y 451
            TL   ++   R F++TNL+P+  Y
Sbjct: 1541 TLVSNSVKMQRRFVVTNLQPSSVY 1564


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 384 YFNEI*IVYDSFCSR 428
           YF+   I+Y+S C R
Sbjct: 39  YFHHTYIIYESLCGR 53


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 384 YFNEI*IVYDSFCSR 428
           YF+   I+Y+S C R
Sbjct: 39  YFHHTYIIYESLCGR 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,390
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)