Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3657
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 32 0.50
11_04_0240 - 15246357-15246935,15247100-15247561 31 0.67
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 31 1.2
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233... 29 4.7
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 29 4.7
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920... 29 4.7
04_01_0572 + 7404842-7405502,7405581-7406143,7406338-7406479,740... 28 6.2
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 6.2
08_01_0014 + 102100-102455,102543-102900 28 8.2
07_01_0239 + 1744353-1746365 28 8.2
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/87 (28%), Positives = 40/87 (45%)
Frame = +3
Query: 318 TLIRNGSQGELDFEDNDSNISCDSLNSSEFSGSVHTDESHSDYGKKDKKLDIPVAPVMPV 497
TL+R ++ ++ NDS + +S NSS+ +G + S ++ K + L V PV
Sbjct: 2360 TLLRRVAKDSVESSINDSGDNSNSFNSSKIAGQARSLLSEEEFAKMEVSLSGWEQNVRPV 2419
Query: 498 FNKTAVKDSFLPQGLLQDIRDRSAKLS 578
+ AV S L G + KLS
Sbjct: 2420 DMEKAVL-SLLEFGQITAATQLQQKLS 2445
>11_04_0240 - 15246357-15246935,15247100-15247561
Length = 346
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 600 NNEHDNEETNQNINEDANVPKES 668
N E NE+ NQN+NE+ NV +++
Sbjct: 23 NEEEGNEDPNQNLNEEGNVERDA 45
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = -2
Query: 215 VTWRTLTARHNHTGHRTE*VTIYIRSYI-----SLIIFFSFKNFGCSLIDVQSDEAVIAF 51
V+W TL ARH G+ E V++Y + ++ F S SL D++S +
Sbjct: 344 VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQ 403
Query: 50 SAYVACFEMIVVDVAL 3
+ +AC + V AL
Sbjct: 404 TLKMACSNNVFVSSAL 419
>08_02_0746 +
20721421-20721649,20722912-20722971,20723318-20723377,
20723458-20723553,20723764-20723871,20724037-20724090,
20724275-20724414,20724499-20724570,20724642-20724692,
20724943-20725017,20725205-20725585,20726372-20727604,
20727679-20727831
Length = 903
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 591 ESQNNEHDNEETNQN--INEDANVPKESAQ 674
+ NN +DN ETNQ I ED N+ E+ Q
Sbjct: 333 DDDNNPNDNSETNQQELIEEDINIFVENEQ 362
>06_03_0095 - 16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 518 RQLSAARSTSRHQRPLGQTKHSRNGKSKQ*TRQ 616
RQLS+ TS HQR +G + R+GK+ Q T++
Sbjct: 1169 RQLSSRHRTSSHQRMVGISAR-RDGKAMQVTKE 1200
>02_02_0469 +
10691648-10691692,10691755-10691907,10692043-10692093,
10692162-10692224,10692327-10693031,10693128-10693223,
10693307-10695547
Length = 1117
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 576 STVETESQNNEHDNEETNQNINEDANVPKES 668
S T+ QN HDN E+N+ ++D N +S
Sbjct: 133 SLQHTDGQNQSHDNMESNEVSSDDRNSDGDS 163
>04_01_0572 +
7404842-7405502,7405581-7406143,7406338-7406479,
7406605-7407436,7407546-7407729
Length = 793
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 600 NNEHDNEETNQNINEDANVPKES 668
N E NE+ NQ +NE+ NV +++
Sbjct: 23 NEEEGNEDPNQYLNEEGNVERDA 45
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 600 NNEHDNEETNQNINEDANVPKES 668
N E NE+ NQ +NE+ NV +++
Sbjct: 122 NEEEGNEDPNQYLNEEGNVERDA 144
>08_01_0014 + 102100-102455,102543-102900
Length = 237
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 390 LNSSEFSGSVHTDESHSDYGKKDKKLDIPVAP 485
++ S+ SGSVH DE +GK D AP
Sbjct: 1 MSGSDTSGSVHVDEHGHGHGKASSSYDGAGAP 32
>07_01_0239 + 1744353-1746365
Length = 670
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 DFEDNDSNISCDSLNSSEFS-GSVHTDESHS 440
D +DN I+ +SLNSS+ S +TDE +S
Sbjct: 133 DIDDNHVGININSLNSSQSSPAGYYTDEPYS 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,366,141
Number of Sequences: 37544
Number of extensions: 318210
Number of successful extensions: 1007
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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