Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3657
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.2  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          24   1.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +3

Query: 318 TLIRNGSQGELDFEDNDSNI--SCDSLNSSEFSGSVHTDESHSDYGKKDKKLDIPVAPVM 491
           ++I  G++    F   D+N   SC+  N+S    +    E+ S+Y + +K+  +P   ++
Sbjct: 352 SIICGGNKRSQVFRGRDANRQNSCNIYNASSRMENNLRGETQSNYREMEKRQSVPANDLL 411

Query: 492 PV--FNKTAVKDSFLPQ 536
                N   V   FL Q
Sbjct: 412 TTEKDNNEIVTAQFLNQ 428


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 326 NQSYRHNFLCGIGFE*LLFG*RRWGAV 246
           N +  HN L G+ F  + FG  +W  V
Sbjct: 30  NTTITHNILRGMQFTDITFGVNKWSKV 56


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 591 ESQNNEHDNEETNQNINEDANVPKESA 671
           E  +++ D+E  N+NI      P  S+
Sbjct: 83  EETDDKDDDESDNENIKSQKEFPNSSS 109


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 5/24 (20%), Positives = 15/24 (62%)
 Frame = +3

Query: 585 ETESQNNEHDNEETNQNINEDANV 656
           + ++QNN++DN   +  ++  + +
Sbjct: 520 QNDNQNNQNDNNRNDNQVHHSSKL 543


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = +3

Query: 426 DESHSDYGKKDKKLDIPVAPVMPVFNKTAVKDSFLPQGLLQDIRDRSAKLSTVETESQNN 605
           +ES+ +Y  + K+  I   P      + A   + + +   ++  + +       T + NN
Sbjct: 182 EESNENYNWEHKETHIDWQPEDEECTE-ATAGAVVLETCQRNSNNSTITAGNANTNASNN 240

Query: 606 EHDNEETNQNINEDAN 653
            ++N   N N N  AN
Sbjct: 241 NNNNNNNNNN-NNGAN 255


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 512 RQRQLSAARSTSRHQRPLGQTKHSRNGKSKQ*TRQRRNEPE 634
           +Q+Q+ A +   +HQ+   QT+H  N +  Q  +Q++ + +
Sbjct: 414 QQQQMQAQQ---QHQQQQQQTQHVINAQQPQQQQQQQQQQQ 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,635
Number of Sequences: 438
Number of extensions: 3658
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)