Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3656
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.18
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 29 0.54
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 29 0.54
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.95
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11... 27 2.9
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.8
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 6.7
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 6.7
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 6.7
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 8.9
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 25 8.9
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 8.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.9
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 8.9
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 398 PQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKNDTTSS 538
P TSSS+ T ++ S S ASSS+ +IS+ ++ + T++S
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTS 287
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 169 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRYSSSQPTTGSSTL 312
SS + +S S ++ PT+ + T SS SSS PT+ SST+
Sbjct: 260 SSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTI 307
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 154 VRH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRYSS 282
+RH Q H P QP++ RS TALP P+ N + S+ +S
Sbjct: 121 LRHQQKIHRNP--QPRRRRRST-TALPNPSLSNVSVSTTNLAS 160
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 95 SSSAHHKLRLPQSPHSRR*KYVIDSRPTASQHRSLNRTIAADSPHFLVLRHATSL 259
S +H + S S + K I+ A H++ NRT DSP +V T L
Sbjct: 295 SHQPYHYTNVKDSQGSHQTKVTIEENMEAPSHQAANRTTLTDSPLGIVEDETTIL 349
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 0.95
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 386 SLDAPQTSSSTGDTHAAFKLSLDSPQASSSTGPC--KLISARTTLIKNDTTSS 538
SL + SSST DT + D+ S P K +S+ TTL+K +TSS
Sbjct: 511 SLASEVYSSSTVDTISKLNTDKDNYLIKSKKEPIQQKSVSSETTLVKPSSTSS 563
>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 218 DSPHFLVLRHATSLPHHAATVR 283
+SP+FL+L+H LP A ++R
Sbjct: 34 ESPNFLILQHNNLLPREAKSLR 55
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 645 TCIYALYLE--NVVSEIQASVNYLALYDGYPPHH 550
+CI L+L+ + +I+ + L LYD YPP H
Sbjct: 506 SCIKRLHLKLSKGIMDIKVLTHQLMLYDLYPPAH 539
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 260 PHHAATVRRSPRPDHQRLGSHISGVAALHTWTTGD-THAAFKLSLDAPQTSSSTGDTHAA 436
PH RR+ HQ + +H +L T G+ + ++ L+ D T SS HA+
Sbjct: 183 PHLETLRRRNLSIHHQHIQAHEMAQESLETRNPGNISSSSAPLASDQSPTVSSN-HIHAS 241
Query: 437 FKLSLDSPQASSSTGP 484
L+L S + P
Sbjct: 242 GNLALGSNSGLNPRSP 257
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 155 TFICENAGIVVAEVYDALMMNQKVACSNHV 66
TFICE VV+ V A + C N +
Sbjct: 230 TFICEECHTVVSNVEQAFRYTEPTQCPNEL 259
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 166 QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRYSSSQPTTGSST 309
QSS S S D + L L + NFT + +S + P SS+
Sbjct: 301 QSSDSYLKSNKSFDQLNNLVGLSTGNSENFTPENNSFSWTHPKKNSSS 348
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 395 APQTSSSTGDTH---AAFKLSLDSPQASSSTGP 484
AP+ SS + + ++F+LSL SP +S GP
Sbjct: 65 APEVSSPLAEPYESSSSFRLSLSSPPSSKFGGP 97
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 126 HNPRILADKSTSLTVVPQQASIAASTGPSQP 218
H P + DK+ VP +A++ + G S+P
Sbjct: 65 HLPLLCEDKNVPYVFVPSKAALGRACGVSRP 95
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +1
Query: 229 LPGPTARNFTASSRRYSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQSRRTADF 408
LP P+A T SS+ + S T + + H S + RH R + ++R
Sbjct: 91 LPQPSALALT-SSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRH 149
Query: 409 EQHWRH 426
H RH
Sbjct: 150 GSHRRH 155
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +1
Query: 169 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRYSSSQPTTGSSTLGVTHLRRGSSAH 348
SS S +S S ++ ++ + ++SS SSS ++ SS+ V SS+H
Sbjct: 159 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSH 218
Query: 349 MDYWRHARSIQAQSR 393
+ S + SR
Sbjct: 219 SSSSSSSSSSSSSSR 233
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 81 RNLLIHHQRIINFGYHNPRILA-DKSTSLTVVPQQAS 188
R L+ +QR ++ + NP + A +K ++ ++PQ+++
Sbjct: 597 RRLIDEYQRQLHIDFENPAVSASEKLSTEEIIPQESN 633
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,983
Number of Sequences: 5004
Number of extensions: 66121
Number of successful extensions: 280
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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