Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3656
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46676-1|AAY86202.1|  184|Caenorhabditis elegans Hypothetical pr...    31   0.67 
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    29   4.7  

>U46676-1|AAY86202.1|  184|Caenorhabditis elegans Hypothetical
           protein F23G4.1 protein.
          Length = 184

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 457 TAGFEQHWPLQANLSTDNAN*K*HDLQSRRGVMWRVAIIQRKIIDRCLNLAYDIFK--IK 630
           T+ F  HW     +  +  N K HDL   RG+M  V I Q+ I DR     Y +F   +K
Sbjct: 27  TSLFTDHW-----VDVEVKNPKGHDLYLHRGLMQWVCINQKDISDRNCIAKYPLFPGWLK 81

Query: 631 RIYT 642
            ++T
Sbjct: 82  SVFT 85


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
           protein D1007.13a protein.
          Length = 142

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 174 PQQASIAASTGPSQPTHRTSWSYGTQLHCLITPLQFVAAHDRIINAWGHTSPAWQLCT 347
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P   L T
Sbjct: 15  PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 72


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 174 PQQASIAASTGPSQPTHRTSWSYGTQLHCLITPLQFVAAHDRIINAWGHTSPAWQLCT 347
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P   L T
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 177


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
            protein H43E16.1 protein.
          Length = 1203

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 178  SKPASQPQQDHRSRLTALPGPTARNFTASSRRYSSSQPT---TGSSTLGVTHLRRGSS 342
            S  AS   Q   S  TA PG +    T +S + SSS  T   TGS+T+  T + +GSS
Sbjct: 925  STSASSSTQPIASSTTANPGSSTSGPTIASTQGSSSTQTNSNTGSTTVATT-VTQGSS 981



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 404 TSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKNDTTSS 538
           +S++TG T +   +S+ + Q SS+T P    S++ T  +  + SS
Sbjct: 661 SSANTGSTSSGTTVSVQTTQVSSTTSPVASSSSQMTSTQQPSGSS 705


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,294,816
Number of Sequences: 27780
Number of extensions: 402476
Number of successful extensions: 1427
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)