Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3656
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.33 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 232 PGPTARNFTASSRRYSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARS 375
           P P  R  +A S   SSS P  G++  G    R G   +    +  +S
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKS 558



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 129 NPRILADKSTSLTVVPQQASIAASTGPSQ 215
           NPRI +  S+S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 491 ACKGQCCSKPAVSRG*A*MLRACRQCCSKSAVR 393
           AC+G+C S   VS      +     CC +S  R
Sbjct: 52  ACRGRCSSYLQVSGSKIWQMERSCMCCQESGER 84


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +1

Query: 166  QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRYSSSQPTTGSSTLGVTHLRRG-SS 342
            Q    +   QPQQ  +      P P  +      ++    Q   G+ +  V  L+RG +S
Sbjct: 1507 QQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRGYNS 1566

Query: 343  AHMDYWRHARSIQAQSRRTAD 405
             +      A S Q Q +++ +
Sbjct: 1567 GNNRSGEQANSQQQQQQQSGE 1587


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 263 HHAATVRRSPRPDHQRLGSHISGVAALHTWT 355
           ++ A ++  P P +    SHI    ++ T+T
Sbjct: 429 YNPALIQSQPSPQYPSTSSHILQQPSIRTYT 459


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -2

Query: 540 RLEVVSFLISVVRAEISLQGPVLLEACGESRLSLNAACVSPVLLEVCGASRLS 382
           +L V  ++I ++           L  CG + ++     +SP+L  VC  +RL+
Sbjct: 22  QLVVGPYVIGLMNTMTHTTNAFCLPFCGPNVINPFFCDMSPLLSLVCADTRLN 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,589
Number of Sequences: 438
Number of extensions: 4721
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)