Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3655
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.6  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   4.8  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   4.8  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   6.3  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 196  ENSPAVCDLHNVNTRNKHXL-ALPAAXIXKISNSFRGLGXQLFSKIPQNVHLLPVHRFK 369
            +NS  VC L  ++ +  H L  +  + +     SF+     L   +P   H LP +RF+
Sbjct: 3985 KNSRIVC-LSEIHNQLPHQLLCISRSIVFNKQTSFKNNLLNLLELLPTMTHTLPHNRFR 4042


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +1

Query: 187 KTCENSPAVCDLHNVNTRNKHXLALPAAXIXKISNSFRGLGXQLFSKIPQNVHLLPVHRF 366
           KTC+    +  L     +N+H + +P++ +        G   + F K   +   L V  +
Sbjct: 445 KTCQVISFLASLKEKGIQNRHLVVVPSSTL--------GNWLREFEKFCPS---LRVESY 493

Query: 367 KKTVTERLCNKAYYKDKDFLLDGTTWE 447
             T +ER+  + Y  D DF +  TT++
Sbjct: 494 SGTQSERINKRYYLMDTDFDVLVTTYQ 520


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 73  FVLFIICTR-GNP*GTSLRKSKF*L*RPNTFLKIY 174
           + ++++CT  GNP  +SL K KF    PN    ++
Sbjct: 261 YTVYMVCTDFGNPNTSSLEKPKFDYLPPNILQSVH 295


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 283 ISNSFRGLGXQLFSKIPQNVHLLPVHRFKKTVTERLCNKAYYKDK 417
           +SN  R +  ++ SK      +LP+H    T  +R C K Y K K
Sbjct: 823 VSNIARCI-REIKSKDGSKFEVLPLHASLNTSEQRRCFKTYTKRK 866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,960
Number of Sequences: 5004
Number of extensions: 40115
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)