Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3655
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z81071-8|CAB03016.1|  317|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical
           protein W09H1.5 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 57  CRSRAIRAIYNMHPRESLRDQFKEIKILTLASQYIFENLLYVRKNM*EFP 206
           CR   I+ +  +  R++L +  KE+K L  A + I +  LY RK   +FP
Sbjct: 179 CRILGIKTVNVVRSRDNLEELVKELKDLG-ADEVITQEELYSRKK--KFP 225


>Z81071-8|CAB03016.1|  317|Caenorhabditis elegans Hypothetical
           protein F28F8.6 protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 268 PPATQAYVCS*CSHYANRRLLGNSHMFLRTYNKFSKMYWDAKVRILI 128
           P   +AY+C+   H+   R  GN    L + N+  K+  D  V + +
Sbjct: 104 PLTARAYICNLREHWFVLRKFGNQWFELNSVNRGPKLLSDTYVSMFL 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,597,698
Number of Sequences: 27780
Number of extensions: 232764
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)