Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3654
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1219 - 28491185-28494415                                         28   6.6  
06_01_0295 - 2154069-2155483,2155561-2155708                           27   8.7  

>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -1

Query: 361 VNLLTIKHNQSSNQLENFVDNVSKLLYLLVVGPLVSPHG*VPP 233
           +N+L +  N+ +  + +++  +SKL YL + G L+S  G +PP
Sbjct: 475 LNILNLSGNRLTGPIPSWLGGMSKLYYLDLSGNLLS--GEIPP 515


>06_01_0295 - 2154069-2155483,2155561-2155708
          Length = 520

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 253 PHG*VPPPCLFLP*SSNALRFEGWGSRCNYTETLELIRG 137
           P G +    LFLP + N+L  +G   RC+  + L+ IRG
Sbjct: 216 PAGLLTLGALFLPETPNSLIQQGKVERCDVEQLLKKIRG 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,192
Number of Sequences: 37544
Number of extensions: 322507
Number of successful extensions: 698
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)