Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3653
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    27   1.9  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   1.9  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    27   2.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.4  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   5.9  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   5.9  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   7.8  

>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = -2

Query: 547 IFAICLQKKILKP---FTIKPVLEKNIFFEKLRISRNTRYFFLTNSNCTFILSV---KMP 386
           I+++ +  K +KP     +KP  E N  +E  + +++     L NSN T +++V   K+ 
Sbjct: 172 IWSVLIHNKNVKPNQATMVKPPAEVNYLYELDKTTQDVIMLILDNSNDTSLITVPGSKLQ 231

Query: 385 VFSPS 371
           +  PS
Sbjct: 232 IALPS 236


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -3

Query: 534 VYRKKYLSHLQ*NQCWRKIFFSKNFVFPVTQGIFS*RIRIVLSYYPSKCLYSLHHST 364
           VY K  L+ L  ++  RK+ +   F    T  ++  R+R  LS +P+ CL S++  T
Sbjct: 639 VYLKTTLNRLYNSKLTRKVLYYL-FSPLFTLELWKLRVRGALSKFPTNCLRSVYSHT 694


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 393 LTDNMKVQFEFVRKKYLVLR 452
           LTD M+V FE+    YLVLR
Sbjct: 601 LTDGMRVWFEWCANAYLVLR 620


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 408 KVQFEFVRKKYLVLREIRSFSKK 476
           K ++EF++K+YL L  I   SKK
Sbjct: 265 KTEYEFLQKRYLSLARIMFVSKK 287


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 414 VLSYYPSKCLYSLHHSTQDTSSPRLVTSPQGGPSRIS 304
           ++S YPS   Y  HHS  +  + R  + P G  S +S
Sbjct: 225 IVSQYPSGHRYETHHSVHNLGTKR-DSVPSGADSDLS 260


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 420 EFVRKKYLVLREIRSFSKKIFFSNTGFIVNGLSI 521
           +++R  + VL +  +F+  IFF +TGF+ N   I
Sbjct: 369 DYIRNLF-VLAKREAFASGIFFGSTGFLGNATVI 401


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 228 KCFTICFCKSGSLHCALF----YI*DEE*YSHWCIVLKEEAI*LSYPIR 94
           KCF ICFC + +L   L          E + H  + LK+E+  L  PIR
Sbjct: 117 KCFVICFCPNHNLTLPLMSAEAICNVVETWKHLYVTLKKES--LEGPIR 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,062
Number of Sequences: 5004
Number of extensions: 65177
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)