Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3653
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    33   0.25 
AC006832-8|AAF40000.1|  465|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF016664-8|AAY44018.1|  397|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF332207-1|AAK17978.1|  378|Caenorhabditis elegans nuclear recep...    28   5.4  
AF016445-12|AAC69062.1|  374|Caenorhabditis elegans Nuclear horm...    28   5.4  
AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA s...    28   5.4  
AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical...    27   9.5  

>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 109 KLYSF--FFKNNTPMTILLFILNIKKCAMQ*AGFAKANRETFKALYKSVQRGPS 264
           + Y F  +FKNN P   L  +  ++K A+    F K  ++T+K  +K+++   S
Sbjct: 565 RFYEFTNYFKNNKPKVFLECVSRLRKTAIDGENFVKDIQKTYKKSHKTLESDSS 618


>AC006832-8|AAF40000.1|  465|Caenorhabditis elegans Hypothetical
           protein ZK355.6 protein.
          Length = 465

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +3

Query: 387 GILTDNMKVQFEFVRKKYLVLREIRSFSKKIFFSNTGFIVNGLSIFFCKQIANIMF 554
           GILT N         +   + + +R+FS  I F NTGF    LSIF+   + +I F
Sbjct: 56  GILTFNSDTDLSH-SELVTLFKNMRTFSGGITFENTGF--QNLSIFWVHDVDSITF 108


>AF016664-8|AAY44018.1|  397|Caenorhabditis elegans Hypothetical
           protein D2062.12 protein.
          Length = 397

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +1

Query: 418 SNSSGKNTLCYGKYEVFRKKYFSPTLVL 501
           SN SG  T    ++E++RKK+++PTL++
Sbjct: 97  SNYSGIRTFSTTRHEMWRKKFWTPTLMM 124


>Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical
           protein ZK524.3b protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 360 PALNDGENTGILTDNMKVQFEFVRKKYLVLREIRSFSKK 476
           P + DG N  I+   +K  FE    ++LVL++  S + K
Sbjct: 229 PVMKDGSNDEIIDLRIKDIFEISNAEFLVLKQSHSLADK 267


>Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical
           protein ZK524.3a protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 360 PALNDGENTGILTDNMKVQFEFVRKKYLVLREIRSFSKK 476
           P + DG N  I+   +K  FE    ++LVL++  S + K
Sbjct: 260 PVMKDGSNDEIIDLRIKDIFEISNAEFLVLKQSHSLADK 298


>AF332207-1|AAK17978.1|  378|Caenorhabditis elegans nuclear receptor
           NHR-57 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 363 ALNDGENTGILTDNMKVQFEFVRKKYLVLREIRSFSKKIFF 485
           A N GE   I ++++ +QFEF+   +   +E+  F KK  F
Sbjct: 159 ATNYGEFCKIYSNDVYLQFEFLEGSFPQFKEMGGFEKKHVF 199


>AF016445-12|AAC69062.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 57 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 363 ALNDGENTGILTDNMKVQFEFVRKKYLVLREIRSFSKKIFF 485
           A N GE   I ++++ +QFEF+   +   +E+  F KK  F
Sbjct: 155 ATNYGEFCKIYSNDVYLQFEFLEGSFPQFKEMGGFEKKHVF 195


>AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 360 PALNDGENTGILTDNMKVQFEFVRKKYLVLREIRSFSKK 476
           P + DG N  I+   +K  FE    ++LVL++  S + K
Sbjct: 229 PVMKDGSNDEIIDLRIKDIFEISNAEFLVLKQSHSLADK 267


>AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical
           protein ZK973.1 protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 348 DWTYPALNDGENTGILTDNMKVQFEFVRKKYLVLREIRSFSKK-IFFSNTGFIVNGLS 518
           D T  ALN G + GI+T   K++ EF   KY     I  FS+K ++F    F    L+
Sbjct: 241 DHTVSALNKGFDEGIIT--WKIECEFNDAKY-----IHPFSRKSVYFGMKNFYQEALA 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,191,862
Number of Sequences: 27780
Number of extensions: 360849
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)