Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3652
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0033 + 546670-546885,547497-547637,548025-548291                 30   1.5  
01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519     28   5.9  
07_01_0514 - 3837182-3837373,3837896-3838099                           28   7.8  

>09_01_0033 + 546670-546885,547497-547637,548025-548291
          Length = 207

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 525 MIPLEVAAFNMSRPP*TRSVQFSPFWLTAPSIAFPPTNTTST 400
           M  L++ A   SR P TR  ++  F    PS++ PPTN TS+
Sbjct: 82  MNDLKLMAVTFSRQPSTRVERYEVF-SPVPSLSKPPTNKTSS 122


>01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519
          Length = 236

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 558 FCCHCYTSCHHFSH*VIQ 611
           FC +C  SCHH SH VIQ
Sbjct: 47  FCYYC-RSCHHSSHRVIQ 63


>07_01_0514 - 3837182-3837373,3837896-3838099
          Length = 131

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 445 QPEWGELDRPGLWRPTHVEGC 507
           QP+ G +D    W+PTH   C
Sbjct: 43  QPKHGRVDTENRWKPTHALAC 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,094,444
Number of Sequences: 37544
Number of extensions: 360224
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)