Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3652
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical...    29   4.0  
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical
           protein T13H5.6 protein.
          Length = 475

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +1

Query: 145 LSILQIITIQRQVFDFLGYMWXXXXXXXXXXXXXXXGSFGAVQCITKYLIAYAVWSFMWM 324
           L+   +++I R VFD +G +W               G FGA Q     L      + + +
Sbjct: 11  LATWTLLSIARLVFDLIGNLWVVVVFDFVQIVLLISGLFGATQKRRPLLYTLLSSNALSV 70

Query: 325 VWNIFLICYYLNL-GTLNR 378
             N+ +  +Y+ + G ++R
Sbjct: 71  TINVLIFLWYIGVFGEISR 89


>U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical
           protein W03B1.8 protein.
          Length = 705

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 122 CRLRINTNYYKLYKSTIICLYVFIYIAIIDFYNFFP 15
           C L + T Y+K +K  +    + I I++I  YNFFP
Sbjct: 67  CSL-VTTFYFKRFKRILPLYLLIILISMICLYNFFP 101


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 98  YYKLYKSTIICLYVFIYIAIIDFYNFFP 15
           YY+ +K  +    + I ++++ FYNFFP
Sbjct: 73  YYRRFKRLLPLYLLVILLSLLFFYNFFP 100


>AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical
           protein F37C4.1 protein.
          Length = 612

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
 Frame = -2

Query: 239 RILRKLVMMGSHMYPKKSKT---------CL*IVIICKMES*FNIQI*CRLRINTNYYKL 87
           R L  LV++G H YPK              L   ++C +      Q  C L +   Y K 
Sbjct: 18  RALAILVVLGFHFYPKYFPNGYLGVDQFFVLSGFLMCMLLKRAENQSACSL-VTLFYSKR 76

Query: 86  YKSTIICLYVFIYIAIIDFYNFFP 15
           +K  +    + I I++I  YNFFP
Sbjct: 77  FKRILPLYLLIILISMICLYNFFP 100


>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical
           protein C09G5.8 protein.
          Length = 1531

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 455 HSG*QPHPLLSHQLTLPVPNDNKPLSL 375
           +SG QP  LL++Q+ +P P  N  LS+
Sbjct: 722 YSGQQPVKLLANQINIPTPRVNTDLSV 748


>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical
           protein C09G5.8 protein.
          Length = 1531

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 455 HSG*QPHPLLSHQLTLPVPNDNKPLSL 375
           +SG QP  LL++Q+ +P P  N  LS+
Sbjct: 722 YSGQQPVKLLANQINIPTPRVNTDLSV 748


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,246,707
Number of Sequences: 27780
Number of extensions: 330113
Number of successful extensions: 766
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)