Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3650
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    28   1.2  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.8  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   8.5  

>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 66  IVSGTGFSELNSCFNLSN-YEKPVLI 140
           +  GT FSEL +C+ LS+ Y K + I
Sbjct: 548 VAGGTTFSELRTCYELSDKYNKDIYI 573


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -1

Query: 356 RGGHIAXRSDGANANATKFSTGDNAL----EREQRGETL 252
           RGG++   S  ANANA+   TG  +      + +RGE +
Sbjct: 33  RGGNVVVGSSSANANASTAETGKKSAGGSKPKRRRGERI 71


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 214 LHSTFFLLRLKLNFV*RLNIISHCN 140
           LH+ FF+L + L  V   +++ HC+
Sbjct: 360 LHNAFFILHVSLGEVPDFHLLFHCS 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,777
Number of Sequences: 5004
Number of extensions: 49876
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)