Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3650
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49829-10|AAA93389.2|  591|Caenorhabditis elegans Uncoordinated ...    29   3.4  
U49829-9|AAQ81273.1|  673|Caenorhabditis elegans Uncoordinated p...    29   3.4  
S66176-1|AAB28570.1|  591|Caenorhabditis elegans UNC-18 protein.       29   3.4  
S34207-1|AAB21818.1|  673|Caenorhabditis elegans unc-18 protein.       29   3.4  

>U49829-10|AAA93389.2|  591|Caenorhabditis elegans Uncoordinated
           protein 18, isoform a protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 24  SHRPAPRSLAYDTSIVSGTGFSELNSCFNLSNYEKP 131
           ++R  PR + Y   I+ G  FSE+ +C+ ++   KP
Sbjct: 530 NYRSGPRLIIY---IIGGVTFSEMRACYEVTAARKP 562


>U49829-9|AAQ81273.1|  673|Caenorhabditis elegans Uncoordinated
           protein 18, isoform c protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 24  SHRPAPRSLAYDTSIVSGTGFSELNSCFNLSNYEKP 131
           ++R  PR + Y   I+ G  FSE+ +C+ ++   KP
Sbjct: 612 NYRSGPRLIIY---IIGGVTFSEMRACYEVTAARKP 644


>S66176-1|AAB28570.1|  591|Caenorhabditis elegans UNC-18 protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 24  SHRPAPRSLAYDTSIVSGTGFSELNSCFNLSNYEKP 131
           ++R  PR + Y   I+ G  FSE+ +C+ ++   KP
Sbjct: 530 NYRSGPRLIIY---IIGGVTFSEMRACYEVTAARKP 562


>S34207-1|AAB21818.1|  673|Caenorhabditis elegans unc-18 protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 24  SHRPAPRSLAYDTSIVSGTGFSELNSCFNLSNYEKP 131
           ++R  PR + Y   I+ G  FSE+ +C+ ++   KP
Sbjct: 612 NYRSGPRLIIY---IIGGVTFSEMRACYEVTAARKP 644


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,273
Number of Sequences: 27780
Number of extensions: 283406
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)