Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3649
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   1.2  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   4.8  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.4  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   6.4  
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom...    24   8.5  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 2    SWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 94
            S + YK L Q + VK ++  + +ET S+Y++
Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 97  FKWVRTPAYSNDEAGDL 147
           F  ++ P YS D+AGDL
Sbjct: 443 FSALKVPVYSTDDAGDL 459


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 227 LGALTLRLVHPTAPVLLTKIG 165
           +G   LR V+P +P+LLT  G
Sbjct: 323 IGHKELRFVYPISPILLTLAG 343


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 242 SHERFLGALTLRLVHPTAPVLLT 174
           +HE +  AL + L +P  P++LT
Sbjct: 4   NHEVYKDALPISLAYPLPPIILT 26


>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 228 FRRLNTTFGSSHSASSAYQNWPTWHRHQISGF 133
           FRRL++TF +S+ AS  ++      + +I G+
Sbjct: 11  FRRLSSTFKASNKASIEWKKQNIAVKRKIGGY 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,185
Number of Sequences: 5004
Number of extensions: 36973
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)