Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3649
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    27   4.2  
AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    26   9.7  

>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 276 GRWPWKSESAKECATTHLPKQPALKMDGAEAFCLYTTVTGTCDAKFLI 419
           G W  K  +  + A THLP+    K++  + F         C++ F I
Sbjct: 393 GTWSSKQPNCTKVACTHLPEVANAKIEVPDRFLFGDVARVVCNSGFTI 440


>AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical
           protein Y95B8A.11 protein.
          Length = 438

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 19  NFKTVSSGKAND*RHWGRNDLNLFSNFKWVRTP--AYSNDE 135
           NF  + S K+N    +   + +LFS+F+W RTP  A SN+E
Sbjct: 38  NFSNLESPKSNSSSLF---EDSLFSSFRWKRTPERAPSNNE 75


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 238 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*K 351
           W T+  V +S Q+ G   +R P+R + R     + P K
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSPMK 46


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 238 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*K 351
           W T+  V +S Q+ G   +R P+R + R     + P K
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSPMK 46


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 250 KGVGRS*QQDGGHGSRN 300
           +G GR  Q+ GGHG RN
Sbjct: 345 RGGGRGGQRQGGHGGRN 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,229,492
Number of Sequences: 27780
Number of extensions: 210803
Number of successful extensions: 413
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)