Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3643
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0356 + 28662956-28664043,28664255-28665139,28665227-286658...    30   1.5  
02_02_0069 + 6540364-6540878,6541332-6541406,6541818-6541896           28   8.3  

>01_06_0356 +
           28662956-28664043,28664255-28665139,28665227-28665840,
           28665929-28666338
          Length = 998

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -1

Query: 465 ETVICGQSSLRDVLPIIIKMLEPILYTSLSQ---SGRCRPKGGR*QTQKKMGALCRGLEG 295
           + V+  Q+SL   +PI +  L+ ++   LSQ   SG      G+     KM      L G
Sbjct: 487 QVVVLSQNSLSSTIPISLWHLQKLIELDLSQNSLSGSLPADVGKLTAITKMDLSRNQLSG 546

Query: 294 DL*FNLGRL 268
           D+ F+ G L
Sbjct: 547 DIPFSFGEL 555


>02_02_0069 + 6540364-6540878,6541332-6541406,6541818-6541896
          Length = 222

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 392 SIPVFPKVGAA-GLKGGGNRPKKK-WGRCVEA 303
           S P  P  G   G +GGG R ++K W RC++A
Sbjct: 18  SDPHSPARGVVWGRRGGGRRQRRKRWARCLDA 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,611,828
Number of Sequences: 37544
Number of extensions: 354866
Number of successful extensions: 567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)