Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3643
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.53 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 485 YLHMSRLLSKVAICAFRKKNVIDMSIQIDLNIIVSFKE 598
           Y  +S+ + K  IC   K+N ID  I++  +   SF +
Sbjct: 502 YSEVSKWVQKGQICLKEKENEIDFKIEVTEDCNKSFND 539


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 536 KKNVIDMSIQIDLNIIVSFKEYG 604
           K   +D+++ +DL+I  + +EYG
Sbjct: 672 KHKDVDVTLPLDLHIQNAIREYG 694


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 125 LVSIASYRAGAPKFILFTAHFEN 193
           +++   YR GA  F+    HF N
Sbjct: 191 IIASMQYRVGAFGFLYLNKHFTN 213


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 125 LVSIASYRAGAPKFILFTAHFEN 193
           +++   YR GA  F+    HF N
Sbjct: 191 IIASMQYRVGAFGFLYLNKHFTN 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,428
Number of Sequences: 438
Number of extensions: 4175
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)