Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3642
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    27   7.2  
Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical...    26   9.5  
AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical...    26   9.5  

>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 3   SCRFSS*YLIKLRKKFKRYEFFFIRKEI*LLQGS 104
           SC  +  +L+K  +K K    F+ R  + +LQGS
Sbjct: 26  SCAMNFYFLVKTERKKKDMALFYFRFSVDVLQGS 59


>Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 288 FRCLWAPVTT*RQVGCELVHLSSQKK---KKKTRGGARYPIRPI 410
           + C W   T    V C+  H    +K   +KK+ GGA  P++PI
Sbjct: 134 YHCCWN--TAYCSVECQQGHWQIHRKFCRRKKSNGGAPGPVQPI 175


>AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 135 LFFHSLIHLQIVVKLHCLSN 194
           LFF+SL+HL +V+ L  +SN
Sbjct: 347 LFFYSLLHLPLVMLLMGISN 366


>AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 135 LFFHSLIHLQIVVKLHCLSN 194
           LFF+SL+HL +V+ L  +SN
Sbjct: 347 LFFYSLLHLPLVMLLMGISN 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,844,440
Number of Sequences: 27780
Number of extensions: 164435
Number of successful extensions: 227
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)