Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3639
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56...    28   5.9  
01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195...    28   7.8  

>05_01_0084 +
           562119-562411,562854-562902,563151-563162,563194-563327,
           563716-566278
          Length = 1016

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 91  NNDEDVFRSV-MGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRS 267
           N+D ++   + +  ++ CSDD+ ++   +   R +  + N     ++D + ++   SP S
Sbjct: 462 NHDYEITLDIGLSTVEVCSDDDNSIPRLQYNFRQISELENMANETIVDLLGVVTSVSP-S 520

Query: 268 ARSFEPLPDEPRARENQV 321
           A     +  E R R  Q+
Sbjct: 521 ATIMRKIGTETRKRSIQL 538


>01_06_1276 -
           35918954-35919106,35919220-35919325,35919477-35919574,
           35919693-35919757,35919877-35920033,35920177-35920268,
           35920379-35920493,35920574-35920622,35920705-35920858,
           35920993-35921019,35921530-35921707,35922326-35922685,
           35922979-35922987,35923170-35923238
          Length = 543

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 181 KLFPLDTMRRCHRSKFSALPSLIGRRLRHYSLRPQRILL 65
           + FP+D +R   R    ++  +   RL H  L+P+ ILL
Sbjct: 301 RAFPIDLVREFARQILESVAFMHDLRLIHTDLKPENILL 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,108,619
Number of Sequences: 37544
Number of extensions: 311232
Number of successful extensions: 714
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)