Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3639
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical ...    28   7.0  

>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 214 ELNLID-GVSLIGQGSPRSARSFEPLPDEPRARE--NQVDLRLLDGVADFL 357
           EL+L++    ++ Q    S R  + LPDEPR RE    +D  + +GV  F+
Sbjct: 602 ELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFM 652


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 214 ELNLID-GVSLIGQGSPRSARSFEPLPDEPRARE--NQVDLRLLDGVADFL 357
           EL+L++    ++ Q    S R  + LPDEPR RE    +D  + +GV  F+
Sbjct: 604 ELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFM 654


>AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical
           protein F18A12.2 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 163 CLKEKALRYVENVSNSR----ELNLIDGVSLIGQGSPRSARSFEPLPDEPRARENQ 318
           CL +  L YV +  +++     + +    ++I QGSP +++  EP P +P    N+
Sbjct: 96  CLFQACLAYVHSSKSAKMSQPSVIIPQQNAIIPQGSPEASQQREPTPPKPEEPPNE 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,073
Number of Sequences: 27780
Number of extensions: 256487
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)