Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3637
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 29 4.1
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 28 5.4
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070... 28 5.4
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746... 28 7.1
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 7.1
03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411 28 7.1
07_01_0233 - 1703602-1705623 27 9.4
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 213 VKDANGVLFENDADTPDLGLSSTPVQQADNYPKKLVWRNII 335
+ D G L D + PV + DN+ K++WRNI+
Sbjct: 807 IMDTLGALALATEPPNDAMMKRPPVGRGDNFITKVMWRNIV 847
>06_03_1508 - 30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 300 NYPKKLVWRNIILFTYLHIAALYGGYLF-LFHAKWQTDLFAYILYVMSGLGITAGAHRLW 476
N P+ +W N ++ L GY F +F L++ +L V+ L T +
Sbjct: 892 NNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGSAQLWSALLPVVLTLIATQQKDTFF 951
Query: 477 AHKSYKAKWPLRVILI 524
A+ Y KW L +I
Sbjct: 952 ANLCY-TKWALEGFVI 966
>05_05_0338 +
24204301-24206262,24206337-24206495,24206864-24207035,
24207544-24207842,24208301-24208355,24208438-24208487,
24208522-24208827
Length = 1000
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 213 VKDANGVLFENDADTPDLGLSSTPVQQADNYPKKLVWRNII---LFTYLHIAAL 365
+ D G L D + PV++ DN+ +++WRNI+ L+ L +A L
Sbjct: 780 IMDTLGALALATEPPNDEMMKRPPVRRGDNFITRIMWRNILGQGLYQLLVLATL 833
>05_05_0219 +
23371561-23371680,23371799-23372207,23374520-23374635,
23375385-23375855
Length = 371
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +3
Query: 84 YLASVLLFTNRRIDVICE*CIFFKRLINSYWYSVK*QTNMAPNVKDANGVLFENDADTPD 263
Y AS L+FT + V+C C F +R + Y Q M +++GV EN T D
Sbjct: 266 YGASFLVFTVVLVGVVCACCKFARRRASGVPYQ---QLEMGDQAPNSSGV--ENTTSTVD 320
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +1
Query: 337 FLHTFILLRCMEATFSYFMRNGKQTYLPIYCM*CQDLASQQVHIDYGHINHTKQSGLYVL 516
FLH FI +C++ F + + + P+ L S H+ GH+ H L
Sbjct: 3504 FLHHFIHHQCLQKPFLELLLTTQVIHRPL------KLRSFSPHLLSGHLKHIFDERWVHL 3557
Query: 517 SLSSSIPWL 543
++ PW+
Sbjct: 3558 AVEKKSPWI 3566
>03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411
Length = 1311
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = -2
Query: 444 VLTLHTIYRQIGLFAISHEIRKGSLHTTQQYEGM*KVLYSSKLVSLGSCRLAVQVCWTVL 265
VL++ +I + +SH+ R+G + M ++ + + + LG CR ++ +L
Sbjct: 1037 VLSVSNSNSEIAVKRVSHDSRQGVKEFIAEVVSMGRLRHKNLVQLLGYCRRKGEL---LL 1093
Query: 264 SLEYQHHFQREHHLH 220
EY + + HLH
Sbjct: 1094 VYEYMSNGSLDKHLH 1108
>07_01_0233 - 1703602-1705623
Length = 673
Score = 27.5 bits (58), Expect = 9.4
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Frame = -2
Query: 417 QIGLFAISHEIRKGSLHTTQQYEGM*KVLYSSKLVSLGSCRLAVQVCWTVLSLEYQHHFQ 238
QI + +SHE R+G + + ++ + + + LG CR ++ +L EY H
Sbjct: 384 QIAVKRVSHESRQGIREFVAEIVSIGRLRHRNIVQLLGYCRRKDEL---ILVYEYMPHGS 440
Query: 237 REHHL-----HP-LHWAPYWSVISRYTSS--YLLTV*KKYTIHK 130
+ +L HP L W + +I S YL +K IH+
Sbjct: 441 LDKYLYCHSNHPTLDWIQRFRIIKGVASGLLYLHGDWEKVVIHR 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,262,252
Number of Sequences: 37544
Number of extensions: 359525
Number of successful extensions: 926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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