Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3633
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    27   2.0  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   4.6  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   6.1  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 647 HQIPTYN*KYLQFTSYNPIAKVRLAADNSI-LFTQKKKTCYLSTKHLIHGTYEG 489
           + +  +N   +  + YN    +R  A +S  +  QKK   YLSTK+ I   Y+G
Sbjct: 178 YNVYEFNGSGVAMSMYNTDDSIRGFAHSSFQMALQKKMPLYLSTKNTILKKYDG 231


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 645 SNTNLQLKVSTVYFLQSNSQGQTRRRQLYSIHSEKKNLLPLN*TPN 508
           SN    +  +    L SNS G+T +     I + KK+ LP N TP+
Sbjct: 271 SNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKS-LPSNSTPS 315


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 598 IQ*PRSDSPQTTLFYSLRKKKLVTSQLNT 512
           I+  + D P    FY  RK+K+V + L+T
Sbjct: 39  IEIAQDDEPGAGTFYQTRKRKVVRNHLDT 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,265
Number of Sequences: 5004
Number of extensions: 46212
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)