Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3632
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0408 + 18659494-18660362,18660472-18660634,18660976-186611...    29   1.5  
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29...    29   2.6  
12_02_0211 + 15694061-15694457,15694497-15695452                       28   3.4  
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234...    27   5.9  
07_03_0349 - 17051786-17052376                                         27   5.9  
10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019...    27   7.8  

>12_02_0408 +
           18659494-18660362,18660472-18660634,18660976-18661139,
           18661253-18661511,18661605-18661712
          Length = 520

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 152 ATLQKGEMGRKRHLNLLSFLVNVVREKNCR*LNISIDADSYTFLL-LVTVPH 304
           A+L K   GR  HL++  F  NVV  + C  L +  +AD  T +L L+ VPH
Sbjct: 416 ASLTKQFQGRYIHLSMQKFSSNVV--EKC--LKVFKEADKATIILELLAVPH 463


>12_01_0035 -
           295988-296408,296645-296813,296929-296965,297097-297173,
           297391-297631
          Length = 314

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 104 SESKTSNENND*SFSVATLQKGEMGR-KRHLNLLSFLVNVVREKNCR 241
           SESKT+  NND S + +T ++ E G  +R  +  S +   +R KN R
Sbjct: 12  SESKTAAANNDGSSTSSTTEEEESGESQRRTSSSSSVRPYIRSKNPR 58


>12_02_0211 + 15694061-15694457,15694497-15695452
          Length = 450

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -1

Query: 190 VPFSTHLPFL*SSNRKTL--VVIFIRSFGLTFLLIHLKQVPII 68
           + F+ H   + SSN +T+   V  +RS GLT   + L+++PI+
Sbjct: 341 IDFANHKVTITSSNGQTMSFFVSSLRSHGLTLNQVALQEIPIV 383


>10_08_0509 + 18419815-18422150,18422249-18422291,18423154-18423487,
            18423766-18423878,18424461-18424589,18424771-18424864,
            18424967-18425050,18425859-18426047,18426897-18427017,
            18427476-18427692
          Length = 1219

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 18   SLTLSDMDSFMYYFLLIMIGTCFKWISK 101
            ++ +++  SF+  + L+ +G CFK+ISK
Sbjct: 1183 AIYVANHQSFLDIYTLLTLGRCFKFISK 1210


>07_03_0349 - 17051786-17052376
          Length = 196

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 417 SRWVAHLRCRCLWAPVTT*NLCLR 346
           S +   L CRC WA  T+   CLR
Sbjct: 23  SAYTVGLLCRCCWASTTSPPACLR 46


>10_08_0507 +
           18401266-18401341,18401448-18401633,18401918-18401953,
           18402244-18402650,18402998-18403099,18403206-18403433
          Length = 344

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 27  LSDMDSFMYYFLLIMIGTCFKWISK 101
           +++  SF+  + L+ +G CFK+ISK
Sbjct: 181 VANHQSFLDIYTLLTLGRCFKFISK 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,282,807
Number of Sequences: 37544
Number of extensions: 262934
Number of successful extensions: 469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)