Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3632
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81107-5|CAB03232.1|  203|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    27   7.0  

>Z81107-5|CAB03232.1|  203|Caenorhabditis elegans Hypothetical
           protein R07H5.7 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 459 IGYRAPPRDLRTYISRWV 406
           +GY+ PP+D+ T++  W+
Sbjct: 96  MGYQVPPKDICTFLKHWI 113


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 39   DSFMYYFLLIMIGTCFKWISKKVSPKLLMKITTKVFLLLLYKKGRWVEKGT 191
            D   +Y L   I TC    S    P+LL ++T  VF L+L   GR   + T
Sbjct: 1503 DCSTHYSLTTFI-TCLAGKSAFYIPRLLAELTKHVFPLMLRHDGRLTSQKT 1552


>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = -2

Query: 315 R*VVWGTVTRSKKVYESASILIFNYRQFFSLTTLTRKDRRF------KCLFRPISPFCKV 154
           R V+W T+T    +  + +I+I     F ++  LTR  +R        C+   +   C +
Sbjct: 195 RVVIWATMTLFMLILRAITIVITAVCTFITVLRLTRMSKRLVSSERTLCIASFLISSCFL 254

Query: 153 ATEKL*SLFSLEVL 112
            T    SLF+ +V+
Sbjct: 255 GTAAAESLFAFQVV 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,619,152
Number of Sequences: 27780
Number of extensions: 239761
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)