Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3630
(354 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 29 0.16
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 0.64
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual 26 2.0
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 2.6
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 25 2.6
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 4.5
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 24 6.0
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 24 6.0
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 24 7.9
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 24 7.9
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy... 24 7.9
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 29.5 bits (63), Expect = 0.16
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 171 CKLPVQASFSLVVSNDHRYSCEDCG 97
C++ + FS+ + N HRY C CG
Sbjct: 259 CRMYINP-FSIFIDNGHRYRCNSCG 282
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 27.5 bits (58), Expect = 0.64
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 352 SLHSC*YEFVTTIEF-WLTSTLKTSAFEVSCFSTTILNT 239
S+ C Y+F I F +L T SA+E++C T +N+
Sbjct: 553 SVFDCLYKFQKDIAFNFLERTSDISAYEIACAIKTAINS 591
>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 2.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 178 GIV*TSCSGFFFTSRFQR 125
G++ TS GFFF RF+R
Sbjct: 15 GLITTSIGGFFFLRRFRR 32
>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 2.6
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 99 RSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLK 203
R RKN W L K E PPEL P+LK
Sbjct: 150 RKKRKNSPDPWANLQTKPSFGETVQAPPEL-PELK 183
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 70 SRTATSVPVSAVFARISVVVGND**KRSLNRKF 168
S++A P+S ARIS + GN K +L +K+
Sbjct: 80 SKSAKRYPLSTKCARISYMQGNKDTKTALTKKY 112
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 4.5
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +3
Query: 33 LSCYPHDQDNLMQPHGN------ERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELKP 194
LSC DNL Q + N + AS ++K + G W L+ +VY E +P
Sbjct: 891 LSC--RSNDNLGQNNDNHCVLCLQSASHSLMKKTVEGNWVHLICASWTPDVYVPAEESEP 948
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 60 NLMQPHGNERASFRSLRKNIGGR--WKRLVKKKPEQEVYTIPPE--LKPQLKQIY 212
++ + + + F +L I G + RL +K P + IPP+ K + K Y
Sbjct: 104 SMSEESSSTESKFATLNDGINGGNPYSRLYRKNPSSDPNDIPPQFHFKKKSKSFY 158
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 60 NLMQPHGNERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPP 182
+L+Q R +SL K+ K L +KP YT PP
Sbjct: 266 SLLQHKTPRRIRPKSLSKSNSTPLKHLSAQKPNSNYYTGPP 306
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 23.8 bits (49), Expect = 7.9
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +2
Query: 56 GQLNAAARQR----ACQFPQSSQEYRWSLETTSEKEA 154
G++N+ + Q+ A + S Y W L+TT E+ A
Sbjct: 202 GEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 23.8 bits (49), Expect = 7.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 54 QDNLMQPHGNERASFRSLRKNIGGRWKRLVKK 149
Q + PH +ASF L K GGR V K
Sbjct: 337 QPGTVAPHQKFKASFYILTKEEGGRRTGFVDK 368
>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 80 QRACQFPQSSQEYRWSLETTSEKEA*TGSLH 172
Q+A +F + Y++SLE + +++ T SLH
Sbjct: 211 QKAHEFQIPEKVYQFSLEHSVDEDCVTKSLH 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,749
Number of Sequences: 5004
Number of extensions: 21393
Number of successful extensions: 68
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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