Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3630
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0123 + 25817172-25817470,25818983-25819133,25819217-258193...    29   1.4  
01_06_0665 - 31003333-31003680,31003773-31003854,31004068-310041...    28   1.8  
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020...    27   3.2  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    27   4.2  
05_06_0187 - 26212133-26212477,26212564-26212645,26213066-262131...    27   4.2  
07_03_0798 - 21581718-21581724,21582642-21582934                       27   5.6  
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297...    27   5.6  
04_03_0532 - 16824394-16824447,16824545-16824665,16824748-168248...    27   5.6  
09_04_0335 + 16791874-16792178,16792234-16792957                       26   7.4  
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330...    26   7.4  
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945...    26   7.4  
07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188...    26   9.8  
01_06_0884 + 32715963-32716284,32716837-32717567                       26   9.8  

>05_06_0123 +
           25817172-25817470,25818983-25819133,25819217-25819399,
           25819740-25819814,25819985-25820140,25820275-25820373,
           25820457-25820587,25821077-25821158,25821251-25821598
          Length = 507

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 93  SFRSLRKNIGGRWKRLVKKKPEQEVYTIPPEL 188
           +FR LR  +GG+ KR+V+++ E+   +IPP L
Sbjct: 115 NFRVLRVQLGGKEKRVVQQQYEE--VSIPPHL 144


>01_06_0665 -
           31003333-31003680,31003773-31003854,31004068-31004198,
           31004272-31004370,31004511-31004666,31004877-31004951,
           31005554-31005736,31005833-31005983,31006732-31007027
          Length = 506

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 93  SFRSLRKNIGGRWKRLVKKKPEQEVYTIPPEL 188
           +FR +R  +GGR KR+V ++ E+    IPP L
Sbjct: 114 NFRVIRVQLGGREKRVVSQQYEE--VAIPPHL 143


>08_02_0721 +
           20401217-20401360,20401689-20401809,20401969-20402067,
           20402790-20402851,20403680-20403797,20404004-20404343,
           20404435-20404582,20405043-20405144,20405240-20405359,
           20405812-20405895,20405974-20406101,20408314-20408389,
           20408556-20408631,20408800-20408876,20408975-20409031,
           20409411-20409555,20409634-20409806,20409928-20410054,
           20410090-20410192,20410492-20410688,20410946-20411097
          Length = 882

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 35  FVLSSRSGQLNAAARQRACQFPQSSQEYRWSLETTSEKEA*TGSLHDP 178
           FVL+ RSG+L    +Q    F         +LE   ++E  T SL DP
Sbjct: 557 FVLNERSGKLGYTKKQEERHFRGVINLEECNLEEVLDEEDPTRSLKDP 604


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 57   DNLMQPHGNERASFRSLRKNIG---GRWKRLVKKKPEQEVYTIPPELKPQ 197
            D L  P    R +F+S  + +     RW+ L + +PEQE     PEL P+
Sbjct: 1508 DMLGVPGNKTREAFKSKSELLAYEVRRWQALRRPQPEQEARGWLPELFPE 1557


>05_06_0187 -
           26212133-26212477,26212564-26212645,26213066-26213196,
           26213267-26213365,26213627-26213782,26213891-26213965,
           26214156-26214338,26214431-26214581,26215456-26215718
          Length = 494

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 93  SFRSLRKNIGGRWKRLVKKKPEQEVYTIPPEL 188
           +FR LR  +GG+  R++K+  E +  +IPP L
Sbjct: 103 NFRVLRVQLGGKEGRVIKQ--EHDEISIPPHL 132


>07_03_0798 - 21581718-21581724,21582642-21582934
          Length = 99

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 9   SFRRRCLRLSCYPHDQDNLMQPHGNERASFRSLRKNIGGRWK 134
           +F RRC RLS  P DQ    +P      + +  R+  G  WK
Sbjct: 5   AFVRRCRRLSSAPVDQAAEEEPAAVAPPAEKRRRRPSGPAWK 46


>06_03_0551 - 22027441-22028224,22029015-22029344,22029510-22029778,
            22030530-22031453,22037761-22038360,22040049-22040267
          Length = 1041

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 120  GGRWKRLVKKKPEQEVYTIPPELKPQLKQ 206
            GG ++   K++ ++++  +P E+KP LK+
Sbjct: 1008 GGSYREAFKRELKRQIGQLPREMKPVLKE 1036


>04_03_0532 -
           16824394-16824447,16824545-16824665,16824748-16824875,
           16825457-16825603,16825682-16825807,16825895-16826160,
           16826259-16826453,16826577-16826657,16826756-16826830,
           16827270-16827530,16827633-16827719,16827844-16828060
          Length = 585

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +3

Query: 129 WKRLVK--KKPEQEVYTIPPEL 188
           W   +K  KK EQ V+T+PPEL
Sbjct: 108 WDEGIKTMKKGEQAVFTVPPEL 129


>09_04_0335 + 16791874-16792178,16792234-16792957
          Length = 342

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 102 SLRKNIGGRWKRLVKKKPE 158
           +LR+  GGRW+RL+ + PE
Sbjct: 289 ALREVSGGRWRRLLGEVPE 307


>04_03_0068 -
           10631827-10631947,10632037-10632112,10632152-10633021,
           10650975-10651599
          Length = 563

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 81  NERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELK 191
           N  A FRS+R  +    K L+ KKP + V   PP  K
Sbjct: 210 NPEAFFRSVRPQVVAPQKTLLTKKPAEPV---PPTFK 243


>01_05_0033 +
           17390571-17390894,17394152-17394199,17394479-17394526,
           17395224-17395400,17395492-17395642,17395742-17395828,
           17397236-17397360,17397608-17397726,17399983-17400082,
           17400188-17400223
          Length = 404

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 42  YPHDQDNLMQPHGNERASFRSLRKNIGGRW-KR--LVKKKP-EQEVYTIPP 182
           +PH + N +Q H   R    +  K+  G W KR  LV ++P  +E+Y + P
Sbjct: 101 WPHGERNKVQRHREYRQRILNHYKSAAGSWYKRAQLVGQEPLHKELYKMRP 151


>07_03_0409 +
           17817046-17817126,17818320-17818523,17818744-17818856,
           17819446-17819491,17819741-17819787,17820250-17820325,
           17820865-17820937,17821059-17821204,17821382-17821467,
           17821734-17821873,17821944-17822083,17822171-17822221,
           17823644-17823702,17823793-17823949,17824793-17824845,
           17824936-17825034,17825876-17825990,17826075-17826197,
           17826417-17826584
          Length = 658

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 215 NVYLLKLWLELRRDRVNFLFRL 150
           NV +L   ++LR DR++F FRL
Sbjct: 544 NVKILHFEVDLRNDRLDFKFRL 565


>01_06_0884 + 32715963-32716284,32716837-32717567
          Length = 350

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 138 VVSNDHRYSCEDCGNW 91
           V+    +YSC DCG W
Sbjct: 307 VMLQQPQYSCSDCGKW 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,392,002
Number of Sequences: 37544
Number of extensions: 148994
Number of successful extensions: 398
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)