Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3630
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z74030-15|CAI79164.1|  477|Caenorhabditis elegans Hypothetical p...    28   1.6  
Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z74030-6|CAA98444.2|  508|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical p...    27   2.8  
Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AF067212-1|AAC16997.3|  160|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z78412-4|CAB01654.2|  211|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur s...    26   6.6  
AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine re...    26   8.7  
AC006680-6|AAK72300.1|  335|Caenorhabditis elegans Serpentine re...    26   8.7  

>L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical
           protein F54H12.4 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/55 (25%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = +3

Query: 54  QDNLMQPHGNERASFRSLRKNIGGRWKRLVKKKP--EQEVYTIPPELKPQLKQIY 212
           Q+NL Q + N++ + +  R+N+  +++ + +K+   +++ YT PP  K + +Q++
Sbjct: 68  QENLQQQNDNQKRNVKLERRNL--KYEVIPEKRESYQEKDYTNPPVYKAENEQLF 120


>Z74030-15|CAI79164.1|  477|Caenorhabditis elegans Hypothetical
           protein D1054.9d protein.
          Length = 477

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +3

Query: 27  LRLSCYPHDQDNLMQPHGNERAS----FRSLRKNIGGRWKRLVKKKPE--QEVYTIP 179
           LR  C      N   P    RAS    FR +   +G +WK L  KKPE   EV T+P
Sbjct: 315 LRYICRHKAGSNEHDPFSERRASTIGPFRPI--TVGHKWKPLRFKKPEPVDEVATVP 369


>Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical
           protein D1054.9b protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +3

Query: 27  LRLSCYPHDQDNLMQPHGNERAS----FRSLRKNIGGRWKRLVKKKPE--QEVYTIP 179
           LR  C      N   P    RAS    FR +   +G +WK L  KKPE   EV T+P
Sbjct: 315 LRYICRHKAGSNEHDPFSERRASTIGPFRPI--TVGHKWKPLRFKKPEPVDEVATVP 369


>Z74030-6|CAA98444.2|  508|Caenorhabditis elegans Hypothetical
           protein D1054.9a protein.
          Length = 508

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +3

Query: 27  LRLSCYPHDQDNLMQPHGNERAS----FRSLRKNIGGRWKRLVKKKPE--QEVYTIP 179
           LR  C      N   P    RAS    FR +   +G +WK L  KKPE   EV T+P
Sbjct: 315 LRYICRHKAGSNEHDPFSERRASTIGPFRPI--TVGHKWKPLRFKKPEPVDEVATVP 369


>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical
           protein B0024.6 protein.
          Length = 1161

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 249 MVVLKQETSKALVLSVDVNQNSMVVTNSYQHE 344
           ++ L    + +L+++VDV+Q   VVT  Y +E
Sbjct: 474 VLTLDSNNNSSLIMTVDVDQQEAVVTKHYTNE 505


>Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical
           protein Y57G11C.18 protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/55 (23%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
 Frame = +3

Query: 54  QDNLMQPHGNERASFRSLRKNIGGRWKRLVKKKP--EQEVYTIPPELKPQLKQIY 212
           Q+NL Q + N++ + +  R+N+  +++ + +K+   +++ Y  PP  K + +Q++
Sbjct: 402 QENLQQQNDNQKRNVKLERRNL--KYEVIPEKRESYQEKYYESPPVYKAENEQLF 454


>Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical
           protein W02D9.3 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 99  RSLRKNIGGRWKRLVKKKPEQEVYTIP---PELKPQLKQIYVY*TL*KRIVFSMVVLKQ 266
           + L K    R K + KKKPE+E   +P   P    + +  YV+  + +R  +S  V+ Q
Sbjct: 94  KKLPKITEKRAKMVYKKKPEKEKEAVPFIDPNAPKRNRSGYVHFIIHRRASYSKAVMSQ 152


>AF067212-1|AAC16997.3|  160|Caenorhabditis elegans Hypothetical
           protein F37F2.2 protein.
          Length = 160

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 30  RLSCYPHDQDNLMQPHGNERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLK 203
           R  CYP D +   +  G  R       KN  G  K   ++K   E++ +  E+ P+LK
Sbjct: 64  RTKCYPRDGERDFEVQGRVRVQL----KNDDGTAKH--EQKTRDEIFKMVAEMIPKLK 115


>Z78412-4|CAB01654.2|  211|Caenorhabditis elegans Hypothetical
           protein M176.5 protein.
          Length = 211

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
 Frame = -1

Query: 132 SNDHRYSCEDCGN-WHARCRAAALSCPDRED 43
           SN     C      WH +C A A  CP  ED
Sbjct: 153 SNSRATECRTAAKLWHKQCSALAKCCPLVED 183


>Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical
           protein F42A8.2 protein.
          Length = 298

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 137 SFPTTTDILAKTAETG 90
           SFP+T D+ AKT +TG
Sbjct: 35  SFPSTDDVAAKTKKTG 50


>AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur
           subunit of mitochondrialsuccinate dehydrogenase protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 137 SFPTTTDILAKTAETG 90
           SFP+T D+ AKT +TG
Sbjct: 34  SFPSTDDVAAKTKKTG 49


>AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 3 protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -2

Query: 236 SLLERLINVYLLKLWLELRRDRVNFLFRL 150
           S+   ++NVY +K+ ++ R++ + F +RL
Sbjct: 25  SVYTTVMNVYFIKMTVKTRKNMILFFYRL 53


>AC006680-6|AAK72300.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein13 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 106 RLRKLARSLPCGCIKLS 56
           RL +LA S+ CGCI LS
Sbjct: 89  RLAQLAISIRCGCISLS 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,985,343
Number of Sequences: 27780
Number of extensions: 124330
Number of successful extensions: 424
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)