Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3628
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 29 0.54
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 29 0.94
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 28 1.2
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 3.8
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 26 5.0
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 26 5.0
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 26 5.0
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 26 5.0
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 6.6
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 26 6.6
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 26 6.6
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 29.5 bits (63), Expect = 0.54
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 356 YSSHLSQYTTHCYLHISHPAD 418
Y S YTTHC +H++ P D
Sbjct: 99 YCESKSMYTTHCVIHVAVPQD 119
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 28.7 bits (61), Expect = 0.94
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 473 ILSNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFN 309
++SNPS++ D+ VCPP+E S++ T+ + L + T + FN
Sbjct: 419 VVSNPSTLDDDY-NYMFVCPPEEYTYSTDNVRTDSLDLQSLPTPTLEQLESVPFN 472
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 66 FYNLPSARRFYLILNQFTRKENNSYLHTIRG-HHSNHNAEVSN 191
F+ LPS +L R N+ L + G H +HNA+ N
Sbjct: 398 FHGLPSLADLPAVLESMFRPSGNNNLLNLNGIFHPDHNAQTEN 440
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 345 GYSVVDCIKKI*RESQLAVIQSGPRLRIQLFRRVIFVEALAG 220
G + DC ++ RESQ SGP L + F+RVI + G
Sbjct: 99 GIKIQDCSERSLRESQ-----SGPLLLVDPFQRVICLHVYQG 135
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 469 YPIHPRFLKISSELLQFVRRMRDMQVAM 386
+P P L + SEL+QF RR +Q M
Sbjct: 460 FPSSPSSLPLLSELIQFSRRPSPVQTGM 487
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 310 LNLFNTINDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTA 489
L LF +N+A PDD+I P +Y+ + L LR L+ DG +I L
Sbjct: 64 LTLFAPLNEAFPDDSI--EPNLLYYIVNTTELD-----RSVLRTQLKSSDG-QQIALKIH 115
Query: 490 YKVDK-RARGINNNS 531
YK + RA NN+
Sbjct: 116 YKAETGRAYDKVNNA 130
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 497 TLYAVIKFILSNPSSISKDFLRASSVCP 414
+L++ ++ IL +P+S LRA +CP
Sbjct: 544 SLFSTLRIILEHPNSSRLQKLRAPGLCP 571
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = -2
Query: 656 APGFSRKFKVSRSSAKRSSMHCRTLRSSAANS----LFALVNS*LSLLLFIPRARLSTLY 489
AP +R S+ R LRS+ LFAL + + L++ +ARLS+L
Sbjct: 227 APELTRTHSYQSSATLSIDEQRRVLRSNYFQQEIQFLFALQDISIRLIIVPRQARLSSLR 286
Query: 488 AVIKFILSN-PSSISKDFLRA 429
A + + +N P+ ++ LR+
Sbjct: 287 AELALLNNNLPADVNIPLLRS 307
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -2
Query: 500 STLYAVIKFILSNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVL 321
ST V L N + + L S C P + A+ + W+ E G + T S VL
Sbjct: 1591 STFTNVSPHDLLNSLAYTVSSLEVSQRCSPKQSGATRSVWFNELGPLTLSFLPTLSDTVL 1650
Query: 320 K 318
K
Sbjct: 1651 K 1651
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 467 SNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEK 360
SN S+ K+ +A + PP ++ ++E EKGE+
Sbjct: 296 SNDSASRKEKPKARASTPPPLNFSRASEHRNEKGER 331
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/82 (21%), Positives = 32/82 (39%)
Frame = +1
Query: 460 GLDKINLMTAYKVDKRARGINNNSDSYEFTSANKLFAADDLNVRQCMLDLFAEDLETLNF 639
G ++N + Y D + + + +A + DL+ C + F E L+ L
Sbjct: 115 GCIRVNKIIGYLADPLRKALKDEHPYVRKAAAVCVVKMYDLDREYCASNGFIEQLQALVS 174
Query: 640 RENPGAARDYINSLGVSCYQEP 705
NP + + SL Q+P
Sbjct: 175 DPNPVVVANAVRSLAEIHDQDP 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,094,219
Number of Sequences: 5004
Number of extensions: 64050
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -