Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3628
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647...    29   4.0  
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869     29   4.0  
06_03_1214 + 28469848-28473048                                         29   5.2  
12_01_0548 + 4394182-4394313,4394395-4394517                           28   6.9  
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322...    28   6.9  
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764           28   9.2  
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726...    28   9.2  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   9.2  

>06_03_1228 -
           28563546-28563630,28563897-28564000,28564256-28564759,
           28564854-28564932,28566053-28566130,28566227-28566268,
           28566352-28566449,28566542-28566673,28566757-28566879
          Length = 414

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 157 DIIRTTMLRCLIVVLFVVSTVTSQCFYKDDSSKKL 261
           D + TT +R L  V+ VVS  T  CF  DDS+ K+
Sbjct: 79  DGVETTNVRVLGRVVSVVSRDTDVCFTLDDSTGKI 113


>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
          Length = 258

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 650 LALPVTTSI-AWVSRVTKNHISDLIPASGISQTTR 751
           +A  V + + +WV RVT   I +++P   +  TTR
Sbjct: 1   MAAEVASQVNSWVDRVTSGLIKEILPPGSVDHTTR 35


>06_03_1214 + 28469848-28473048
          Length = 1066

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 112 NLPARRTTVTCTPLEDIIRTTMLRCLIVVLFVVSTVTSQCFYKDDSS 252
           NLP   ++ T T     +     R L+++L   ++ TS C  +++SS
Sbjct: 5   NLPCSSSSSTTTTTTTKLSVAFFRLLVILLLSFASPTSSCTEQEESS 51


>12_01_0548 + 4394182-4394313,4394395-4394517
          Length = 84

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 22  FKANRIIIHNKIILYSIIFQVLDDFT*FSTNLPARRTTVTCTPLEDI 162
           FKA R ++HN      I  +VL++F  +S +  A+ T    + + D+
Sbjct: 10  FKAERYVLHNPKSFNDIFIRVLEEFVCWSYSFIAQVTRKGSSVISDL 56


>03_06_0124 -
           31830797-31831371,31831510-31831532,31832143-31832271,
           31833287-31834842
          Length = 760

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 388 LLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTAYKV 498
           L+  Y++ G  T    RKS++ E+GL  ++ +T  K+
Sbjct: 461 LVYKYMAKGDLTSALHRKSVDAEEGLRSLDWITRLKI 497


>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
          Length = 973

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +1

Query: 412 GGQTEEALRKSLEIEDGLDKINLMTAYKVDKRARGINNNSDSYEFTSANKLFAADDLNV 588
           G +TE A   +  +E GLD   ++    V+K    I +    Y FT   K    DDLN+
Sbjct: 511 GSKTEAAAVLANIVESGLDPDTIV----VNKEGHVITSKYSVYNFTHMLKCSMPDDLNL 565


>04_04_1528 +
           34172149-34172233,34172335-34172414,34172621-34172689,
           34172780-34172837,34173296-34173357,34173441-34173554,
           34173862-34173964,34174085-34174134,34174335-34174724,
           34174918-34175244,34175360-34175689
          Length = 555

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = -2

Query: 458 SSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFNVNPSWPLYK 282
           + IS+D L A +V  P E  AS+N + ++ G+K  L S T+ +  LK+  +    PL K
Sbjct: 87  NEISQDTL-AHAVRHPSELPASANWFNSKSGKKIPLRSVTSIIDGLKKSYIEKLRPLEK 144


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 638 SGKILALPVTTSI-AWVSRVTKNHISDLIPASGISQTTR 751
           SGK  A  V + + +WV +VT   I +++P   +  TTR
Sbjct: 207 SGK--AAEVASQVNSWVEKVTSGLIKEILPPGSVDHTTR 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,551,892
Number of Sequences: 37544
Number of extensions: 395706
Number of successful extensions: 955
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)