Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3626
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    27   3.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.5  
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    25   7.3  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   7.3  

>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 308 LISE*NNQTDECPGSFSRLRHSVRSVRDFEILFVKTNYNISY 433
           LI E +N +    G F   +  +RS + + +    TN N+ Y
Sbjct: 304 LIQERSNSSKS--GDFEHFKECIRSTKTYHLFLKHTNTNVEY 343


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +2

Query: 275  MRRHVRSVSSFLISE*NNQTDECPGSFSRLRHSVRSV--RDFEILFVKTNY 421
            M  + R++      E  N  D+C G+F RL H +  +  R F +      Y
Sbjct: 934  MMNYSRALKLLYRVEQPNLLDDCDGNFERLEHQLEQMAYRKFRLCISMQRY 984


>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 90  SPQCIYVKLLTGQDIYERWIDTSD 19
           S QC+   L    D+Y  WID  D
Sbjct: 55  SHQCLITALSAPIDVYSDWIDACD 78


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 279 DGMFVRLVHF*FQNETIKRTNALVRSVVYVILYVPCAILKFYSLKRIIIFHMVFLFKH 452
           DGM V   +F  +  T+K +    R  V +++   CA   F+    +I + + F+ KH
Sbjct: 178 DGMAVPFFYFAIKLLTVKPSRNAGRDWVLLVVLYECAFGIFFGC--VIGYLLSFILKH 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,032
Number of Sequences: 5004
Number of extensions: 40086
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)